Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00976 and ECD_00977 are separated by 18 nucleotides ECD_00977 and ECD_00978 overlap by 4 nucleotides ECD_00978 and ECD_00979 overlap by 4 nucleotides ECD_00979 and ECD_00980 overlap by 4 nucleotides
ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136
_00976
ECD_00977: ECD_00977 - hydrogenase 1, b-type cytochrome subunit, at 1,040,155 to 1,040,862
_00977
ECD_00978: ECD_00978 - hydrogenase 1 maturation protease, at 1,040,859 to 1,041,446
_00978
ECD_00979: ECD_00979 - putative HyaA chaperone, at 1,041,443 to 1,041,841
_00979
ECD_00980: ECD_00980 - hydrogenase-1 protein nickel incorporation factor, at 1,041,838 to 1,042,695
_00980
Position (kb)
1040
1041
1042 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1040.189 kb on - strand at 1040.309 kb on - strand, within ECD_00977 at 1040.309 kb on - strand, within ECD_00977 at 1040.317 kb on + strand, within ECD_00977 at 1040.318 kb on - strand, within ECD_00977 at 1040.318 kb on - strand, within ECD_00977 at 1040.319 kb on + strand, within ECD_00977 at 1040.488 kb on + strand, within ECD_00977 at 1040.522 kb on + strand, within ECD_00977 at 1040.752 kb on + strand, within ECD_00977 at 1040.844 kb on + strand at 1040.971 kb on - strand, within ECD_00978 at 1040.993 kb on + strand, within ECD_00978 at 1040.993 kb on + strand, within ECD_00978 at 1041.093 kb on + strand, within ECD_00978 at 1041.562 kb on - strand, within ECD_00979 at 1041.644 kb on + strand, within ECD_00979 at 1041.646 kb on + strand, within ECD_00979 at 1041.646 kb on + strand, within ECD_00979 at 1041.646 kb on + strand, within ECD_00979 at 1041.647 kb on - strand, within ECD_00979 at 1041.647 kb on - strand, within ECD_00979 at 1041.647 kb on - strand, within ECD_00979 at 1041.770 kb on - strand, within ECD_00979 at 1042.098 kb on + strand, within ECD_00980 at 1042.341 kb on - strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.371 kb on - strand, within ECD_00980
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 1,040,189 - -1.0 1,040,309 - ECD_00977 0.22 -0.9 1,040,309 - ECD_00977 0.22 +1.9 1,040,317 + ECD_00977 0.23 +0.0 1,040,318 - ECD_00977 0.23 -0.1 1,040,318 - ECD_00977 0.23 +0.0 1,040,319 + ECD_00977 0.23 -0.3 1,040,488 + ECD_00977 0.47 -0.5 1,040,522 + ECD_00977 0.52 -0.7 1,040,752 + ECD_00977 0.84 -0.8 1,040,844 + +0.2 1,040,971 - ECD_00978 0.19 -0.9 1,040,993 + ECD_00978 0.23 -0.1 1,040,993 + ECD_00978 0.23 -0.3 1,041,093 + ECD_00978 0.40 -0.1 1,041,562 - ECD_00979 0.30 -2.0 1,041,644 + ECD_00979 0.50 +0.4 1,041,646 + ECD_00979 0.51 -0.4 1,041,646 + ECD_00979 0.51 +0.5 1,041,646 + ECD_00979 0.51 -0.7 1,041,647 - ECD_00979 0.51 -0.8 1,041,647 - ECD_00979 0.51 +0.4 1,041,647 - ECD_00979 0.51 +0.5 1,041,770 - ECD_00979 0.82 -0.1 1,042,098 + ECD_00980 0.30 +1.1 1,042,341 - ECD_00980 0.59 +1.1 1,042,370 + ECD_00980 0.62 -0.1 1,042,370 + ECD_00980 0.62 +0.6 1,042,370 + ECD_00980 0.62 -0.1 1,042,370 + ECD_00980 0.62 +0.2 1,042,371 - ECD_00980 0.62 +0.6
Or see this region's nucleotide sequence