Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00852 and ECD_00853 are separated by 269 nucleotides ECD_00853 and ECD_00854 are separated by 29 nucleotides ECD_00854 and ECD_00855 are separated by 159 nucleotides ECD_00855 and ECD_00856 overlap by 17 nucleotides
ECD_00852: ECD_00852 - putative transporter, at 892,838 to 894,523
_00852
ECD_00853: ECD_00853 - inner membrane protein, at 894,793 to 895,170
_00853
ECD_00854: ECD_00854 - glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a), at 895,200 to 895,457
_00854
ECD_00855: ECD_00855 - DUF1418 family protein, at 895,617 to 895,904
_00855
ECD_00856: ECD_00856 - nitroreductase A, NADPH-dependent, FMN-dependent, at 895,888 to 896,610
_00856
Position (kb) 895
896 Strain fitness (log2 ratio) -1
0
1 at 894.246 kb on - strand, within ECD_00852 at 894.707 kb on + strand at 895.347 kb on - strand, within ECD_00854 at 895.347 kb on - strand, within ECD_00854 at 895.351 kb on - strand, within ECD_00854 at 895.354 kb on + strand, within ECD_00854 at 895.478 kb on + strand at 895.479 kb on - strand at 895.569 kb on + strand at 895.977 kb on + strand, within ECD_00856 at 895.977 kb on + strand, within ECD_00856 at 896.147 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.270 kb on - strand, within ECD_00856
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 894,246 - ECD_00852 0.84 +0.8 894,707 + +1.1 895,347 - ECD_00854 0.57 +0.6 895,347 - ECD_00854 0.57 -0.1 895,351 - ECD_00854 0.59 +0.2 895,354 + ECD_00854 0.60 +1.2 895,478 + +0.1 895,479 - +0.0 895,569 + +0.6 895,977 + ECD_00856 0.12 +0.1 895,977 + ECD_00856 0.12 +0.7 896,147 + ECD_00856 0.36 +0.1 896,269 + ECD_00856 0.53 -0.0 896,269 + ECD_00856 0.53 +0.1 896,270 - ECD_00856 0.53 +1.3
Or see this region's nucleotide sequence