Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00760 and ECD_00761 overlap by 8 nucleotides ECD_00761 and ECD_00762 overlap by 8 nucleotides ECD_00762 and ECD_00763 overlap by 1 nucleotides
ECD_00760: ECD_00760 - putative ABC transporter permease, at 810,111 to 811,244
_00760
ECD_00761: ECD_00761 - putative ABC transporter ATPase, at 811,237 to 812,973
_00761
ECD_00762: ECD_00762 - putative membrane fusion protein (MFP) component of efflux pump, membrane anchor, at 812,966 to 813,964
_00762
ECD_00763: ECD_00763 - DUF1956 domain-containing tetR family putative transcriptional regulator, at 813,964 to 814,635
_00763
Position (kb) 811
812
813 Strain fitness (log2 ratio) -2
-1
0
1 at 810.269 kb on - strand, within ECD_00760 at 810.296 kb on + strand, within ECD_00760 at 810.509 kb on + strand, within ECD_00760 at 810.542 kb on - strand, within ECD_00760 at 810.558 kb on - strand, within ECD_00760 at 810.699 kb on - strand, within ECD_00760 at 810.744 kb on + strand, within ECD_00760 at 810.745 kb on - strand, within ECD_00760 at 811.164 kb on - strand at 811.282 kb on - strand at 811.376 kb on + strand at 811.586 kb on - strand, within ECD_00761 at 811.857 kb on + strand, within ECD_00761 at 812.074 kb on - strand, within ECD_00761 at 812.098 kb on - strand, within ECD_00761 at 812.324 kb on + strand, within ECD_00761 at 812.351 kb on - strand, within ECD_00761 at 812.598 kb on + strand, within ECD_00761 at 812.629 kb on - strand, within ECD_00761 at 812.629 kb on - strand, within ECD_00761 at 812.699 kb on + strand, within ECD_00761 at 812.722 kb on - strand, within ECD_00761 at 812.722 kb on - strand, within ECD_00761 at 812.722 kb on - strand, within ECD_00761 at 812.890 kb on - strand at 813.050 kb on - strand at 813.174 kb on + strand, within ECD_00762 at 813.214 kb on + strand, within ECD_00762 at 813.228 kb on + strand, within ECD_00762 at 813.229 kb on - strand, within ECD_00762 at 813.229 kb on - strand, within ECD_00762 at 813.464 kb on - strand, within ECD_00762 at 813.539 kb on - strand, within ECD_00762 at 813.573 kb on + strand, within ECD_00762 at 813.574 kb on - strand, within ECD_00762 at 813.588 kb on + strand, within ECD_00762 at 813.595 kb on - strand, within ECD_00762 at 813.770 kb on - strand, within ECD_00762 at 813.841 kb on + strand, within ECD_00762 at 813.965 kb on + strand at 813.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 810,269 - ECD_00760 0.14 +0.5 810,296 + ECD_00760 0.16 +0.8 810,509 + ECD_00760 0.35 -0.7 810,542 - ECD_00760 0.38 +0.4 810,558 - ECD_00760 0.39 +0.3 810,699 - ECD_00760 0.52 +0.0 810,744 + ECD_00760 0.56 -0.2 810,745 - ECD_00760 0.56 -0.2 811,164 - -0.7 811,282 - +0.4 811,376 + +1.7 811,586 - ECD_00761 0.20 +0.3 811,857 + ECD_00761 0.36 -0.0 812,074 - ECD_00761 0.48 -0.9 812,098 - ECD_00761 0.50 +0.9 812,324 + ECD_00761 0.63 +0.3 812,351 - ECD_00761 0.64 +0.2 812,598 + ECD_00761 0.78 -2.5 812,629 - ECD_00761 0.80 +0.1 812,629 - ECD_00761 0.80 -0.5 812,699 + ECD_00761 0.84 -0.6 812,722 - ECD_00761 0.85 -1.5 812,722 - ECD_00761 0.85 -0.8 812,722 - ECD_00761 0.85 -0.7 812,890 - +0.0 813,050 - +0.4 813,174 + ECD_00762 0.21 -1.1 813,214 + ECD_00762 0.25 +1.2 813,228 + ECD_00762 0.26 -0.0 813,229 - ECD_00762 0.26 -0.0 813,229 - ECD_00762 0.26 +1.4 813,464 - ECD_00762 0.50 +0.5 813,539 - ECD_00762 0.57 +0.6 813,573 + ECD_00762 0.61 +0.1 813,574 - ECD_00762 0.61 -0.1 813,588 + ECD_00762 0.62 +1.7 813,595 - ECD_00762 0.63 +0.0 813,770 - ECD_00762 0.80 +0.3 813,841 + ECD_00762 0.88 +0.6 813,965 + -1.4 813,966 - -1.1
Or see this region's nucleotide sequence