Experiment: Control_TnN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00687 and ECD_00688 overlap by 1 nucleotides ECD_00688 and ECD_00689 are separated by 103 nucleotides ECD_00689 and ECD_00690 are separated by 108 nucleotides
ECD_00687: ECD_00687 - succinyl-CoA synthetase, beta subunit, at 721,675 to 722,841
_00687
ECD_00688: ECD_00688 - succinyl-CoA synthetase, NAD(P)-binding, alpha subunit, at 722,841 to 723,710
_00688
ECD_00689: ECD_00689 - transcriptional repressor for the mannosyl-D-glycerate catabolic operon, at 723,814 to 724,536
_00689
ECD_00690: ECD_00690 - fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component, at 724,645 to 726,621
_00690
Position (kb) 723
724
725 Strain fitness (log2 ratio) -1
0
1
2
3 at 722.839 kb on + strand at 722.840 kb on - strand at 722.840 kb on - strand at 722.939 kb on + strand, within ECD_00688 at 722.956 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.054 kb on + strand, within ECD_00688 at 723.055 kb on - strand, within ECD_00688 at 723.058 kb on + strand, within ECD_00688 at 723.120 kb on - strand, within ECD_00688 at 723.315 kb on + strand, within ECD_00688 at 723.537 kb on + strand, within ECD_00688 at 723.537 kb on + strand, within ECD_00688 at 723.573 kb on - strand, within ECD_00688 at 723.708 kb on + strand at 723.718 kb on + strand at 723.728 kb on + strand at 723.794 kb on + strand at 723.794 kb on + strand at 723.794 kb on + strand at 723.795 kb on - strand at 723.795 kb on - strand at 723.883 kb on - strand at 723.883 kb on - strand at 723.883 kb on - strand at 723.955 kb on - strand, within ECD_00689 at 724.052 kb on + strand, within ECD_00689 at 724.235 kb on - strand, within ECD_00689 at 724.433 kb on - strand, within ECD_00689 at 724.518 kb on - strand at 724.520 kb on - strand at 725.044 kb on - strand, within ECD_00690 at 725.049 kb on + strand, within ECD_00690 at 725.106 kb on + strand, within ECD_00690 at 725.107 kb on - strand, within ECD_00690 at 725.108 kb on + strand, within ECD_00690 at 725.109 kb on - strand, within ECD_00690 at 725.200 kb on - strand, within ECD_00690 at 725.242 kb on + strand, within ECD_00690 at 725.242 kb on + strand, within ECD_00690 at 725.242 kb on + strand, within ECD_00690 at 725.243 kb on - strand, within ECD_00690 at 725.500 kb on - strand, within ECD_00690 at 725.514 kb on + strand, within ECD_00690
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnN remove 722,839 + -0.5 722,840 - -0.5 722,840 - -0.6 722,939 + ECD_00688 0.11 -0.6 722,956 + ECD_00688 0.13 +0.8 723,054 + ECD_00688 0.24 -1.0 723,054 + ECD_00688 0.24 -0.1 723,054 + ECD_00688 0.24 -0.0 723,054 + ECD_00688 0.24 +0.7 723,054 + ECD_00688 0.24 +0.6 723,054 + ECD_00688 0.24 +0.5 723,054 + ECD_00688 0.24 -0.6 723,055 - ECD_00688 0.25 +0.4 723,058 + ECD_00688 0.25 -0.3 723,120 - ECD_00688 0.32 +3.1 723,315 + ECD_00688 0.54 +0.2 723,537 + ECD_00688 0.80 -0.3 723,537 + ECD_00688 0.80 -0.4 723,573 - ECD_00688 0.84 +0.6 723,708 + +0.3 723,718 + +0.1 723,728 + -0.7 723,794 + -1.2 723,794 + -0.3 723,794 + +0.4 723,795 - -0.7 723,795 - -1.4 723,883 - +0.2 723,883 - +0.3 723,883 - +0.1 723,955 - ECD_00689 0.20 +0.2 724,052 + ECD_00689 0.33 -0.5 724,235 - ECD_00689 0.58 -0.8 724,433 - ECD_00689 0.86 -0.8 724,518 - +0.7 724,520 - +0.2 725,044 - ECD_00690 0.20 -1.0 725,049 + ECD_00690 0.20 +0.5 725,106 + ECD_00690 0.23 +0.2 725,107 - ECD_00690 0.23 -0.0 725,108 + ECD_00690 0.23 -0.1 725,109 - ECD_00690 0.23 -0.1 725,200 - ECD_00690 0.28 +0.8 725,242 + ECD_00690 0.30 +1.3 725,242 + ECD_00690 0.30 +0.5 725,242 + ECD_00690 0.30 -0.4 725,243 - ECD_00690 0.30 -0.2 725,500 - ECD_00690 0.43 +0.0 725,514 + ECD_00690 0.44 +1.1
Or see this region's nucleotide sequence