Strain Fitness in Escherichia coli BL21 around ECD_00076

Experiment: Control_TnN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00075 and ECD_00076 overlap by 1 nucleotidesECD_00076 and ECD_00077 are separated by 92 nucleotidesECD_00077 and ECD_00078 are separated by 659 nucleotides ECD_00075: ECD_00075 - 3-isopropylmalate dehydrogenase, NAD(+)-dependent, at 83,672 to 84,763 _00075 ECD_00076: ECD_00076 - 2-isopropylmalate synthase, at 84,763 to 86,334 _00076 ECD_00077: ECD_00077 - leu operon leader peptide, at 86,427 to 86,513 _00077 ECD_00078: ECD_00078 - global transcription factor, at 87,173 to 88,117 _00078 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -1 0 1at 83.925 kb on + strand, within ECD_00075at 83.925 kb on + strand, within ECD_00075at 83.926 kb on - strand, within ECD_00075at 83.926 kb on - strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.094 kb on + strand, within ECD_00075at 84.094 kb on + strand, within ECD_00075at 84.095 kb on - strand, within ECD_00075at 84.095 kb on - strand, within ECD_00075at 84.095 kb on - strand, within ECD_00075at 84.241 kb on + strand, within ECD_00075at 84.264 kb on + strand, within ECD_00075at 84.264 kb on + strand, within ECD_00075at 84.265 kb on - strand, within ECD_00075at 84.330 kb on + strand, within ECD_00075at 84.330 kb on + strand, within ECD_00075at 84.330 kb on + strand, within ECD_00075at 84.513 kb on - strand, within ECD_00075at 84.513 kb on - strand, within ECD_00075at 84.629 kb on + strand, within ECD_00075at 84.637 kb on - strand, within ECD_00075at 84.750 kb on + strandat 84.751 kb on - strandat 84.841 kb on - strandat 84.926 kb on + strand, within ECD_00076at 84.926 kb on + strand, within ECD_00076at 84.990 kb on - strand, within ECD_00076at 84.990 kb on - strand, within ECD_00076at 85.008 kb on + strand, within ECD_00076at 85.010 kb on + strand, within ECD_00076at 85.011 kb on - strand, within ECD_00076at 85.011 kb on - strand, within ECD_00076at 85.011 kb on - strand, within ECD_00076at 85.027 kb on - strand, within ECD_00076at 85.038 kb on - strand, within ECD_00076at 85.152 kb on - strand, within ECD_00076at 85.218 kb on - strand, within ECD_00076at 85.500 kb on + strand, within ECD_00076at 85.504 kb on - strand, within ECD_00076at 85.519 kb on + strand, within ECD_00076at 85.519 kb on + strand, within ECD_00076at 85.520 kb on - strand, within ECD_00076at 85.538 kb on - strand, within ECD_00076at 85.552 kb on - strand, within ECD_00076at 85.715 kb on - strand, within ECD_00076at 85.728 kb on + strand, within ECD_00076at 85.740 kb on + strand, within ECD_00076at 85.759 kb on - strand, within ECD_00076at 85.772 kb on + strand, within ECD_00076at 85.814 kb on + strand, within ECD_00076at 85.815 kb on - strand, within ECD_00076at 85.964 kb on + strand, within ECD_00076at 85.964 kb on + strand, within ECD_00076at 85.965 kb on - strand, within ECD_00076at 85.965 kb on - strand, within ECD_00076at 85.965 kb on - strand, within ECD_00076at 85.965 kb on - strand, within ECD_00076at 86.037 kb on + strand, within ECD_00076at 86.044 kb on - strand, within ECD_00076at 86.050 kb on - strand, within ECD_00076at 86.116 kb on + strand, within ECD_00076at 86.125 kb on + strand, within ECD_00076at 86.126 kb on - strand, within ECD_00076at 86.224 kb on - strandat 86.378 kb on - strandat 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.482 kb on - strand, within ECD_00077at 86.485 kb on - strand, within ECD_00077at 86.485 kb on - strand, within ECD_00077at 86.632 kb on + strandat 86.980 kb on + strandat 87.150 kb on + strandat 87.168 kb on + strandat 87.168 kb on + strandat 87.172 kb on + strandat 87.249 kb on + strandat 87.249 kb on + strandat 87.250 kb on - strandat 87.250 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnN
remove
83,925 + ECD_00075 0.23 -0.4
83,925 + ECD_00075 0.23 +1.3
83,926 - ECD_00075 0.23 -0.2
83,926 - ECD_00075 0.23 -0.0
84,090 + ECD_00075 0.38 -0.9
84,090 + ECD_00075 0.38 -0.1
84,090 + ECD_00075 0.38 -0.6
84,090 + ECD_00075 0.38 +0.4
84,091 - ECD_00075 0.38 +0.0
84,091 - ECD_00075 0.38 -0.8
84,091 - ECD_00075 0.38 -0.2
84,091 - ECD_00075 0.38 +0.5
84,091 - ECD_00075 0.38 +0.9
84,091 - ECD_00075 0.38 -0.5
84,091 - ECD_00075 0.38 +0.4
84,091 - ECD_00075 0.38 +0.2
84,094 + ECD_00075 0.39 +0.6
84,094 + ECD_00075 0.39 +0.3
84,095 - ECD_00075 0.39 -0.4
84,095 - ECD_00075 0.39 +0.8
84,095 - ECD_00075 0.39 +0.7
84,241 + ECD_00075 0.52 +0.0
84,264 + ECD_00075 0.54 -0.1
84,264 + ECD_00075 0.54 -0.5
84,265 - ECD_00075 0.54 +0.0
84,330 + ECD_00075 0.60 +0.1
84,330 + ECD_00075 0.60 -0.7
84,330 + ECD_00075 0.60 -0.1
84,513 - ECD_00075 0.77 -0.8
84,513 - ECD_00075 0.77 +0.9
84,629 + ECD_00075 0.88 -0.4
84,637 - ECD_00075 0.88 +0.1
84,750 + -0.0
84,751 - +0.4
84,841 - -0.1
84,926 + ECD_00076 0.10 +0.1
84,926 + ECD_00076 0.10 +0.3
84,990 - ECD_00076 0.14 -1.2
84,990 - ECD_00076 0.14 +0.2
85,008 + ECD_00076 0.16 +0.7
85,010 + ECD_00076 0.16 +0.8
85,011 - ECD_00076 0.16 -0.2
85,011 - ECD_00076 0.16 +0.2
85,011 - ECD_00076 0.16 +0.5
85,027 - ECD_00076 0.17 +0.2
85,038 - ECD_00076 0.17 +0.1
85,152 - ECD_00076 0.25 +0.1
85,218 - ECD_00076 0.29 -0.1
85,500 + ECD_00076 0.47 -0.1
85,504 - ECD_00076 0.47 -0.7
85,519 + ECD_00076 0.48 +0.9
85,519 + ECD_00076 0.48 +1.1
85,520 - ECD_00076 0.48 +0.4
85,538 - ECD_00076 0.49 +0.0
85,552 - ECD_00076 0.50 +0.5
85,715 - ECD_00076 0.61 -0.0
85,728 + ECD_00076 0.61 +1.0
85,740 + ECD_00076 0.62 +0.5
85,759 - ECD_00076 0.63 +0.5
85,772 + ECD_00076 0.64 +1.7
85,814 + ECD_00076 0.67 -0.8
85,815 - ECD_00076 0.67 +0.9
85,964 + ECD_00076 0.76 -0.1
85,964 + ECD_00076 0.76 -0.1
85,965 - ECD_00076 0.76 -0.2
85,965 - ECD_00076 0.76 +1.4
85,965 - ECD_00076 0.76 +0.3
85,965 - ECD_00076 0.76 -0.1
86,037 + ECD_00076 0.81 +1.1
86,044 - ECD_00076 0.81 +1.5
86,050 - ECD_00076 0.82 +1.0
86,116 + ECD_00076 0.86 +0.1
86,125 + ECD_00076 0.87 +0.3
86,126 - ECD_00076 0.87 +0.2
86,224 - +0.4
86,378 - +0.0
86,482 - ECD_00077 0.63 +1.1
86,482 - ECD_00077 0.63 +0.4
86,482 - ECD_00077 0.63 -0.3
86,482 - ECD_00077 0.63 +0.1
86,482 - ECD_00077 0.63 +0.5
86,482 - ECD_00077 0.63 -0.3
86,485 - ECD_00077 0.67 +0.3
86,485 - ECD_00077 0.67 -1.4
86,632 + -0.9
86,980 + -0.8
87,150 + +0.2
87,168 + +0.0
87,168 + +1.0
87,172 + -0.7
87,249 + -1.2
87,249 + +0.4
87,250 - -0.9
87,250 - +0.3

Or see this region's nucleotide sequence