Strain Fitness in Escherichia coli BL21 around ECD_02916

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02914 and ECD_02915 are separated by 283 nucleotidesECD_02915 and ECD_02916 are separated by 95 nucleotidesECD_02916 and ECD_02917 are separated by 15 nucleotidesECD_02917 and ECD_02918 are separated by 1 nucleotides ECD_02914: ECD_02914 - BMFP family putative fusogenic protein, at 3,052,277 to 3,052,567 _02914 ECD_02915: ECD_02915 - putative fimbrial-like adhesin protein, at 3,052,851 to 3,053,402 _02915 ECD_02916: ECD_02916 - putative outer membrane usher protein, at 3,053,498 to 3,055,966 _02916 ECD_02917: ECD_02917 - putative periplasmic pilin chaperone, at 3,055,982 to 3,056,731 _02917 ECD_02918: ECD_02918 - fimbrial protein, at 3,056,733 to 3,057,797 _02918 Position (kb) 3053 3054 3055 3056Strain fitness (log2 ratio) -2 -1 0 1 2at 3052.614 kb on + strandat 3052.976 kb on + strand, within ECD_02915at 3053.112 kb on - strand, within ECD_02915at 3053.279 kb on + strand, within ECD_02915at 3053.327 kb on + strand, within ECD_02915at 3054.034 kb on + strand, within ECD_02916at 3054.199 kb on + strand, within ECD_02916at 3054.496 kb on + strand, within ECD_02916at 3054.496 kb on + strand, within ECD_02916at 3054.497 kb on - strand, within ECD_02916at 3054.497 kb on - strand, within ECD_02916at 3054.497 kb on - strand, within ECD_02916at 3054.497 kb on - strand, within ECD_02916at 3054.500 kb on - strand, within ECD_02916at 3054.500 kb on - strand, within ECD_02916at 3054.645 kb on - strand, within ECD_02916at 3054.726 kb on + strand, within ECD_02916at 3054.764 kb on - strand, within ECD_02916at 3054.787 kb on + strand, within ECD_02916at 3054.787 kb on + strand, within ECD_02916at 3054.788 kb on - strand, within ECD_02916at 3054.941 kb on + strand, within ECD_02916at 3055.014 kb on - strand, within ECD_02916at 3055.193 kb on + strand, within ECD_02916at 3055.313 kb on - strand, within ECD_02916at 3055.338 kb on - strand, within ECD_02916at 3055.367 kb on + strand, within ECD_02916at 3055.378 kb on + strand, within ECD_02916at 3055.401 kb on - strand, within ECD_02916at 3055.550 kb on - strand, within ECD_02916at 3055.589 kb on + strand, within ECD_02916at 3055.590 kb on - strand, within ECD_02916at 3055.594 kb on - strand, within ECD_02916at 3055.594 kb on - strand, within ECD_02916at 3055.605 kb on + strand, within ECD_02916at 3055.606 kb on - strand, within ECD_02916at 3055.606 kb on - strand, within ECD_02916at 3055.615 kb on + strand, within ECD_02916at 3055.705 kb on + strand, within ECD_02916at 3055.780 kb on - strandat 3055.835 kb on + strandat 3056.523 kb on - strand, within ECD_02917

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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3,052,614 + +0.2
3,052,976 + ECD_02915 0.23 +0.3
3,053,112 - ECD_02915 0.47 +0.5
3,053,279 + ECD_02915 0.78 +0.4
3,053,327 + ECD_02915 0.86 +0.9
3,054,034 + ECD_02916 0.22 +0.1
3,054,199 + ECD_02916 0.28 +1.0
3,054,496 + ECD_02916 0.40 +0.2
3,054,496 + ECD_02916 0.40 -1.1
3,054,497 - ECD_02916 0.40 +0.3
3,054,497 - ECD_02916 0.40 +1.0
3,054,497 - ECD_02916 0.40 +1.1
3,054,497 - ECD_02916 0.40 -1.6
3,054,500 - ECD_02916 0.41 -0.9
3,054,500 - ECD_02916 0.41 +1.0
3,054,645 - ECD_02916 0.46 +1.5
3,054,726 + ECD_02916 0.50 +1.2
3,054,764 - ECD_02916 0.51 +0.6
3,054,787 + ECD_02916 0.52 +0.2
3,054,787 + ECD_02916 0.52 -0.1
3,054,788 - ECD_02916 0.52 +1.2
3,054,941 + ECD_02916 0.58 -0.2
3,055,014 - ECD_02916 0.61 -1.1
3,055,193 + ECD_02916 0.69 -0.5
3,055,313 - ECD_02916 0.74 +1.1
3,055,338 - ECD_02916 0.75 -1.4
3,055,367 + ECD_02916 0.76 +0.1
3,055,378 + ECD_02916 0.76 -2.1
3,055,401 - ECD_02916 0.77 +0.1
3,055,550 - ECD_02916 0.83 +0.4
3,055,589 + ECD_02916 0.85 -0.0
3,055,590 - ECD_02916 0.85 -0.1
3,055,594 - ECD_02916 0.85 +1.1
3,055,594 - ECD_02916 0.85 +0.3
3,055,605 + ECD_02916 0.85 +0.9
3,055,606 - ECD_02916 0.85 +0.2
3,055,606 - ECD_02916 0.85 +2.4
3,055,615 + ECD_02916 0.86 +0.5
3,055,705 + ECD_02916 0.89 -0.2
3,055,780 - -0.2
3,055,835 + +1.3
3,056,523 - ECD_02917 0.72 +0.3

Or see this region's nucleotide sequence