Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02914 and ECD_02915 are separated by 283 nucleotides ECD_02915 and ECD_02916 are separated by 95 nucleotides ECD_02916 and ECD_02917 are separated by 15 nucleotides ECD_02917 and ECD_02918 are separated by 1 nucleotides
ECD_02914: ECD_02914 - BMFP family putative fusogenic protein, at 3,052,277 to 3,052,567
_02914
ECD_02915: ECD_02915 - putative fimbrial-like adhesin protein, at 3,052,851 to 3,053,402
_02915
ECD_02916: ECD_02916 - putative outer membrane usher protein, at 3,053,498 to 3,055,966
_02916
ECD_02917: ECD_02917 - putative periplasmic pilin chaperone, at 3,055,982 to 3,056,731
_02917
ECD_02918: ECD_02918 - fimbrial protein, at 3,056,733 to 3,057,797
_02918
Position (kb)
3053
3054
3055
3056 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3052.614 kb on + strand at 3052.976 kb on + strand, within ECD_02915 at 3053.112 kb on - strand, within ECD_02915 at 3053.279 kb on + strand, within ECD_02915 at 3053.327 kb on + strand, within ECD_02915 at 3054.034 kb on + strand, within ECD_02916 at 3054.199 kb on + strand, within ECD_02916 at 3054.496 kb on + strand, within ECD_02916 at 3054.496 kb on + strand, within ECD_02916 at 3054.497 kb on - strand, within ECD_02916 at 3054.497 kb on - strand, within ECD_02916 at 3054.497 kb on - strand, within ECD_02916 at 3054.497 kb on - strand, within ECD_02916 at 3054.500 kb on - strand, within ECD_02916 at 3054.500 kb on - strand, within ECD_02916 at 3054.645 kb on - strand, within ECD_02916 at 3054.726 kb on + strand, within ECD_02916 at 3054.764 kb on - strand, within ECD_02916 at 3054.787 kb on + strand, within ECD_02916 at 3054.787 kb on + strand, within ECD_02916 at 3054.788 kb on - strand, within ECD_02916 at 3054.941 kb on + strand, within ECD_02916 at 3055.014 kb on - strand, within ECD_02916 at 3055.193 kb on + strand, within ECD_02916 at 3055.313 kb on - strand, within ECD_02916 at 3055.338 kb on - strand, within ECD_02916 at 3055.367 kb on + strand, within ECD_02916 at 3055.378 kb on + strand, within ECD_02916 at 3055.401 kb on - strand, within ECD_02916 at 3055.550 kb on - strand, within ECD_02916 at 3055.589 kb on + strand, within ECD_02916 at 3055.590 kb on - strand, within ECD_02916 at 3055.594 kb on - strand, within ECD_02916 at 3055.594 kb on - strand, within ECD_02916 at 3055.605 kb on + strand, within ECD_02916 at 3055.606 kb on - strand, within ECD_02916 at 3055.606 kb on - strand, within ECD_02916 at 3055.615 kb on + strand, within ECD_02916 at 3055.705 kb on + strand, within ECD_02916 at 3055.780 kb on - strand at 3055.835 kb on + strand at 3056.523 kb on - strand, within ECD_02917
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 3,052,614 + +0.2 3,052,976 + ECD_02915 0.23 +0.3 3,053,112 - ECD_02915 0.47 +0.5 3,053,279 + ECD_02915 0.78 +0.4 3,053,327 + ECD_02915 0.86 +0.9 3,054,034 + ECD_02916 0.22 +0.1 3,054,199 + ECD_02916 0.28 +1.0 3,054,496 + ECD_02916 0.40 +0.2 3,054,496 + ECD_02916 0.40 -1.1 3,054,497 - ECD_02916 0.40 +0.3 3,054,497 - ECD_02916 0.40 +1.0 3,054,497 - ECD_02916 0.40 +1.1 3,054,497 - ECD_02916 0.40 -1.6 3,054,500 - ECD_02916 0.41 -0.9 3,054,500 - ECD_02916 0.41 +1.0 3,054,645 - ECD_02916 0.46 +1.5 3,054,726 + ECD_02916 0.50 +1.2 3,054,764 - ECD_02916 0.51 +0.6 3,054,787 + ECD_02916 0.52 +0.2 3,054,787 + ECD_02916 0.52 -0.1 3,054,788 - ECD_02916 0.52 +1.2 3,054,941 + ECD_02916 0.58 -0.2 3,055,014 - ECD_02916 0.61 -1.1 3,055,193 + ECD_02916 0.69 -0.5 3,055,313 - ECD_02916 0.74 +1.1 3,055,338 - ECD_02916 0.75 -1.4 3,055,367 + ECD_02916 0.76 +0.1 3,055,378 + ECD_02916 0.76 -2.1 3,055,401 - ECD_02916 0.77 +0.1 3,055,550 - ECD_02916 0.83 +0.4 3,055,589 + ECD_02916 0.85 -0.0 3,055,590 - ECD_02916 0.85 -0.1 3,055,594 - ECD_02916 0.85 +1.1 3,055,594 - ECD_02916 0.85 +0.3 3,055,605 + ECD_02916 0.85 +0.9 3,055,606 - ECD_02916 0.85 +0.2 3,055,606 - ECD_02916 0.85 +2.4 3,055,615 + ECD_02916 0.86 +0.5 3,055,705 + ECD_02916 0.89 -0.2 3,055,780 - -0.2 3,055,835 + +1.3 3,056,523 - ECD_02917 0.72 +0.3
Or see this region's nucleotide sequence