Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02846 and ECD_02847 are separated by 10 nucleotides ECD_02847 and ECD_02848 overlap by 1 nucleotides
ECD_02846: ECD_02846 - glycolate oxidase 4Fe-4S iron-sulfur cluster subunit, at 2,984,475 to 2,985,698
_02846
ECD_02847: ECD_02847 - glycolate oxidase FAD binding subunit, at 2,985,709 to 2,986,761
_02847
ECD_02848: ECD_02848 - glycolate oxidase subunit, FAD-linked, at 2,986,761 to 2,988,260
_02848
Position (kb)
2985
2986
2987 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2984.711 kb on + strand, within ECD_02846 at 2984.769 kb on + strand, within ECD_02846 at 2984.770 kb on - strand, within ECD_02846 at 2984.897 kb on - strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.898 kb on + strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.899 kb on - strand, within ECD_02846 at 2984.926 kb on + strand, within ECD_02846 at 2985.011 kb on + strand, within ECD_02846 at 2985.011 kb on + strand, within ECD_02846 at 2985.012 kb on - strand, within ECD_02846 at 2985.014 kb on + strand, within ECD_02846 at 2985.015 kb on - strand, within ECD_02846 at 2985.051 kb on - strand, within ECD_02846 at 2985.058 kb on + strand, within ECD_02846 at 2985.059 kb on - strand, within ECD_02846 at 2985.162 kb on - strand, within ECD_02846 at 2985.187 kb on - strand, within ECD_02846 at 2985.225 kb on - strand, within ECD_02846 at 2985.225 kb on - strand, within ECD_02846 at 2985.399 kb on - strand, within ECD_02846 at 2985.428 kb on - strand, within ECD_02846 at 2985.462 kb on - strand, within ECD_02846 at 2985.501 kb on - strand, within ECD_02846 at 2985.541 kb on + strand, within ECD_02846 at 2985.542 kb on - strand, within ECD_02846 at 2985.542 kb on - strand, within ECD_02846 at 2985.586 kb on + strand at 2985.587 kb on - strand at 2985.587 kb on - strand at 2985.587 kb on - strand at 2985.587 kb on - strand at 2985.587 kb on - strand at 2985.685 kb on - strand at 2985.769 kb on - strand at 2985.769 kb on - strand at 2985.780 kb on + strand at 2985.988 kb on + strand, within ECD_02847 at 2985.989 kb on - strand, within ECD_02847 at 2986.139 kb on + strand, within ECD_02847 at 2986.139 kb on + strand, within ECD_02847 at 2986.140 kb on - strand, within ECD_02847 at 2986.144 kb on + strand, within ECD_02847 at 2986.144 kb on + strand, within ECD_02847 at 2986.144 kb on + strand, within ECD_02847 at 2986.145 kb on - strand, within ECD_02847 at 2986.145 kb on - strand, within ECD_02847 at 2986.145 kb on - strand, within ECD_02847 at 2986.145 kb on - strand, within ECD_02847 at 2986.145 kb on - strand, within ECD_02847 at 2986.152 kb on + strand, within ECD_02847 at 2986.293 kb on - strand, within ECD_02847 at 2986.293 kb on - strand, within ECD_02847 at 2986.293 kb on - strand, within ECD_02847 at 2986.574 kb on - strand, within ECD_02847 at 2986.595 kb on + strand, within ECD_02847 at 2986.599 kb on + strand, within ECD_02847 at 2986.599 kb on + strand, within ECD_02847 at 2986.599 kb on + strand, within ECD_02847 at 2986.599 kb on + strand, within ECD_02847 at 2986.655 kb on - strand, within ECD_02847 at 2986.655 kb on - strand, within ECD_02847 at 2986.704 kb on + strand at 2986.788 kb on + strand at 2986.789 kb on - strand at 2987.163 kb on + strand, within ECD_02848 at 2987.206 kb on + strand, within ECD_02848 at 2987.207 kb on - strand, within ECD_02848 at 2987.207 kb on - strand, within ECD_02848 at 2987.207 kb on - strand, within ECD_02848 at 2987.209 kb on + strand, within ECD_02848 at 2987.222 kb on + strand, within ECD_02848 at 2987.222 kb on + strand, within ECD_02848 at 2987.355 kb on + strand, within ECD_02848 at 2987.356 kb on - strand, within ECD_02848 at 2987.426 kb on + strand, within ECD_02848 at 2987.426 kb on + strand, within ECD_02848 at 2987.427 kb on - strand, within ECD_02848 at 2987.427 kb on - strand, within ECD_02848 at 2987.427 kb on - strand, within ECD_02848 at 2987.615 kb on + strand, within ECD_02848 at 2987.615 kb on + strand, within ECD_02848 at 2987.615 kb on + strand, within ECD_02848 at 2987.616 kb on - strand, within ECD_02848 at 2987.733 kb on + strand, within ECD_02848 at 2987.733 kb on + strand, within ECD_02848
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 2,984,711 + ECD_02846 0.19 -0.1 2,984,769 + ECD_02846 0.24 -1.0 2,984,770 - ECD_02846 0.24 -0.4 2,984,897 - ECD_02846 0.34 -1.1 2,984,898 + ECD_02846 0.35 -0.2 2,984,898 + ECD_02846 0.35 +0.1 2,984,898 + ECD_02846 0.35 +0.2 2,984,898 + ECD_02846 0.35 +0.6 2,984,898 + ECD_02846 0.35 +0.4 2,984,898 + ECD_02846 0.35 +0.3 2,984,899 - ECD_02846 0.35 +0.6 2,984,899 - ECD_02846 0.35 -0.3 2,984,899 - ECD_02846 0.35 +0.5 2,984,899 - ECD_02846 0.35 -1.2 2,984,899 - ECD_02846 0.35 +1.1 2,984,926 + ECD_02846 0.37 -0.2 2,985,011 + ECD_02846 0.44 -0.8 2,985,011 + ECD_02846 0.44 +0.2 2,985,012 - ECD_02846 0.44 -1.1 2,985,014 + ECD_02846 0.44 -1.1 2,985,015 - ECD_02846 0.44 -0.2 2,985,051 - ECD_02846 0.47 +0.4 2,985,058 + ECD_02846 0.48 -1.3 2,985,059 - ECD_02846 0.48 +0.6 2,985,162 - ECD_02846 0.56 +0.4 2,985,187 - ECD_02846 0.58 +0.2 2,985,225 - ECD_02846 0.61 -0.3 2,985,225 - ECD_02846 0.61 +0.1 2,985,399 - ECD_02846 0.75 -0.4 2,985,428 - ECD_02846 0.78 -0.8 2,985,462 - ECD_02846 0.81 +0.8 2,985,501 - ECD_02846 0.84 -1.7 2,985,541 + ECD_02846 0.87 +0.0 2,985,542 - ECD_02846 0.87 +0.1 2,985,542 - ECD_02846 0.87 -0.5 2,985,586 + -0.1 2,985,587 - +0.2 2,985,587 - +0.0 2,985,587 - +1.0 2,985,587 - +1.5 2,985,587 - -1.3 2,985,685 - +0.2 2,985,769 - -0.2 2,985,769 - +0.4 2,985,780 + -0.5 2,985,988 + ECD_02847 0.26 -1.0 2,985,989 - ECD_02847 0.27 +0.7 2,986,139 + ECD_02847 0.41 -0.3 2,986,139 + ECD_02847 0.41 +0.8 2,986,140 - ECD_02847 0.41 +0.0 2,986,144 + ECD_02847 0.41 -0.2 2,986,144 + ECD_02847 0.41 +1.5 2,986,144 + ECD_02847 0.41 +0.4 2,986,145 - ECD_02847 0.41 +0.5 2,986,145 - ECD_02847 0.41 +0.5 2,986,145 - ECD_02847 0.41 -0.5 2,986,145 - ECD_02847 0.41 +0.3 2,986,145 - ECD_02847 0.41 +0.8 2,986,152 + ECD_02847 0.42 +0.3 2,986,293 - ECD_02847 0.55 +0.1 2,986,293 - ECD_02847 0.55 -0.0 2,986,293 - ECD_02847 0.55 +0.7 2,986,574 - ECD_02847 0.82 +0.1 2,986,595 + ECD_02847 0.84 -0.4 2,986,599 + ECD_02847 0.85 +0.5 2,986,599 + ECD_02847 0.85 +0.7 2,986,599 + ECD_02847 0.85 -0.4 2,986,599 + ECD_02847 0.85 -0.4 2,986,655 - ECD_02847 0.90 +0.6 2,986,655 - ECD_02847 0.90 +0.3 2,986,704 + -1.1 2,986,788 + -0.4 2,986,789 - -0.2 2,987,163 + ECD_02848 0.27 +1.0 2,987,206 + ECD_02848 0.30 -0.4 2,987,207 - ECD_02848 0.30 +0.3 2,987,207 - ECD_02848 0.30 +1.2 2,987,207 - ECD_02848 0.30 +2.4 2,987,209 + ECD_02848 0.30 -0.0 2,987,222 + ECD_02848 0.31 +0.8 2,987,222 + ECD_02848 0.31 +0.2 2,987,355 + ECD_02848 0.40 -0.7 2,987,356 - ECD_02848 0.40 -0.3 2,987,426 + ECD_02848 0.44 +0.3 2,987,426 + ECD_02848 0.44 +0.3 2,987,427 - ECD_02848 0.44 -0.7 2,987,427 - ECD_02848 0.44 +0.9 2,987,427 - ECD_02848 0.44 +0.4 2,987,615 + ECD_02848 0.57 +0.9 2,987,615 + ECD_02848 0.57 -0.9 2,987,615 + ECD_02848 0.57 +3.0 2,987,616 - ECD_02848 0.57 +0.4 2,987,733 + ECD_02848 0.65 -0.0 2,987,733 + ECD_02848 0.65 +0.2
Or see this region's nucleotide sequence