Strain Fitness in Escherichia coli BL21 around ECD_02847

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02846 and ECD_02847 are separated by 10 nucleotidesECD_02847 and ECD_02848 overlap by 1 nucleotides ECD_02846: ECD_02846 - glycolate oxidase 4Fe-4S iron-sulfur cluster subunit, at 2,984,475 to 2,985,698 _02846 ECD_02847: ECD_02847 - glycolate oxidase FAD binding subunit, at 2,985,709 to 2,986,761 _02847 ECD_02848: ECD_02848 - glycolate oxidase subunit, FAD-linked, at 2,986,761 to 2,988,260 _02848 Position (kb) 2985 2986 2987Strain fitness (log2 ratio) -1 0 1 2 3at 2984.711 kb on + strand, within ECD_02846at 2984.769 kb on + strand, within ECD_02846at 2984.770 kb on - strand, within ECD_02846at 2984.897 kb on - strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.926 kb on + strand, within ECD_02846at 2985.011 kb on + strand, within ECD_02846at 2985.011 kb on + strand, within ECD_02846at 2985.012 kb on - strand, within ECD_02846at 2985.014 kb on + strand, within ECD_02846at 2985.015 kb on - strand, within ECD_02846at 2985.051 kb on - strand, within ECD_02846at 2985.058 kb on + strand, within ECD_02846at 2985.059 kb on - strand, within ECD_02846at 2985.162 kb on - strand, within ECD_02846at 2985.187 kb on - strand, within ECD_02846at 2985.225 kb on - strand, within ECD_02846at 2985.225 kb on - strand, within ECD_02846at 2985.399 kb on - strand, within ECD_02846at 2985.428 kb on - strand, within ECD_02846at 2985.462 kb on - strand, within ECD_02846at 2985.501 kb on - strand, within ECD_02846at 2985.541 kb on + strand, within ECD_02846at 2985.542 kb on - strand, within ECD_02846at 2985.542 kb on - strand, within ECD_02846at 2985.586 kb on + strandat 2985.587 kb on - strandat 2985.587 kb on - strandat 2985.587 kb on - strandat 2985.587 kb on - strandat 2985.587 kb on - strandat 2985.685 kb on - strandat 2985.769 kb on - strandat 2985.769 kb on - strandat 2985.780 kb on + strandat 2985.988 kb on + strand, within ECD_02847at 2985.989 kb on - strand, within ECD_02847at 2986.139 kb on + strand, within ECD_02847at 2986.139 kb on + strand, within ECD_02847at 2986.140 kb on - strand, within ECD_02847at 2986.144 kb on + strand, within ECD_02847at 2986.144 kb on + strand, within ECD_02847at 2986.144 kb on + strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.152 kb on + strand, within ECD_02847at 2986.293 kb on - strand, within ECD_02847at 2986.293 kb on - strand, within ECD_02847at 2986.293 kb on - strand, within ECD_02847at 2986.574 kb on - strand, within ECD_02847at 2986.595 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.655 kb on - strand, within ECD_02847at 2986.655 kb on - strand, within ECD_02847at 2986.704 kb on + strandat 2986.788 kb on + strandat 2986.789 kb on - strandat 2987.163 kb on + strand, within ECD_02848at 2987.206 kb on + strand, within ECD_02848at 2987.207 kb on - strand, within ECD_02848at 2987.207 kb on - strand, within ECD_02848at 2987.207 kb on - strand, within ECD_02848at 2987.209 kb on + strand, within ECD_02848at 2987.222 kb on + strand, within ECD_02848at 2987.222 kb on + strand, within ECD_02848at 2987.355 kb on + strand, within ECD_02848at 2987.356 kb on - strand, within ECD_02848at 2987.426 kb on + strand, within ECD_02848at 2987.426 kb on + strand, within ECD_02848at 2987.427 kb on - strand, within ECD_02848at 2987.427 kb on - strand, within ECD_02848at 2987.427 kb on - strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.616 kb on - strand, within ECD_02848at 2987.733 kb on + strand, within ECD_02848at 2987.733 kb on + strand, within ECD_02848

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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2,984,711 + ECD_02846 0.19 -0.1
2,984,769 + ECD_02846 0.24 -1.0
2,984,770 - ECD_02846 0.24 -0.4
2,984,897 - ECD_02846 0.34 -1.1
2,984,898 + ECD_02846 0.35 -0.2
2,984,898 + ECD_02846 0.35 +0.1
2,984,898 + ECD_02846 0.35 +0.2
2,984,898 + ECD_02846 0.35 +0.6
2,984,898 + ECD_02846 0.35 +0.4
2,984,898 + ECD_02846 0.35 +0.3
2,984,899 - ECD_02846 0.35 +0.6
2,984,899 - ECD_02846 0.35 -0.3
2,984,899 - ECD_02846 0.35 +0.5
2,984,899 - ECD_02846 0.35 -1.2
2,984,899 - ECD_02846 0.35 +1.1
2,984,926 + ECD_02846 0.37 -0.2
2,985,011 + ECD_02846 0.44 -0.8
2,985,011 + ECD_02846 0.44 +0.2
2,985,012 - ECD_02846 0.44 -1.1
2,985,014 + ECD_02846 0.44 -1.1
2,985,015 - ECD_02846 0.44 -0.2
2,985,051 - ECD_02846 0.47 +0.4
2,985,058 + ECD_02846 0.48 -1.3
2,985,059 - ECD_02846 0.48 +0.6
2,985,162 - ECD_02846 0.56 +0.4
2,985,187 - ECD_02846 0.58 +0.2
2,985,225 - ECD_02846 0.61 -0.3
2,985,225 - ECD_02846 0.61 +0.1
2,985,399 - ECD_02846 0.75 -0.4
2,985,428 - ECD_02846 0.78 -0.8
2,985,462 - ECD_02846 0.81 +0.8
2,985,501 - ECD_02846 0.84 -1.7
2,985,541 + ECD_02846 0.87 +0.0
2,985,542 - ECD_02846 0.87 +0.1
2,985,542 - ECD_02846 0.87 -0.5
2,985,586 + -0.1
2,985,587 - +0.2
2,985,587 - +0.0
2,985,587 - +1.0
2,985,587 - +1.5
2,985,587 - -1.3
2,985,685 - +0.2
2,985,769 - -0.2
2,985,769 - +0.4
2,985,780 + -0.5
2,985,988 + ECD_02847 0.26 -1.0
2,985,989 - ECD_02847 0.27 +0.7
2,986,139 + ECD_02847 0.41 -0.3
2,986,139 + ECD_02847 0.41 +0.8
2,986,140 - ECD_02847 0.41 +0.0
2,986,144 + ECD_02847 0.41 -0.2
2,986,144 + ECD_02847 0.41 +1.5
2,986,144 + ECD_02847 0.41 +0.4
2,986,145 - ECD_02847 0.41 +0.5
2,986,145 - ECD_02847 0.41 +0.5
2,986,145 - ECD_02847 0.41 -0.5
2,986,145 - ECD_02847 0.41 +0.3
2,986,145 - ECD_02847 0.41 +0.8
2,986,152 + ECD_02847 0.42 +0.3
2,986,293 - ECD_02847 0.55 +0.1
2,986,293 - ECD_02847 0.55 -0.0
2,986,293 - ECD_02847 0.55 +0.7
2,986,574 - ECD_02847 0.82 +0.1
2,986,595 + ECD_02847 0.84 -0.4
2,986,599 + ECD_02847 0.85 +0.5
2,986,599 + ECD_02847 0.85 +0.7
2,986,599 + ECD_02847 0.85 -0.4
2,986,599 + ECD_02847 0.85 -0.4
2,986,655 - ECD_02847 0.90 +0.6
2,986,655 - ECD_02847 0.90 +0.3
2,986,704 + -1.1
2,986,788 + -0.4
2,986,789 - -0.2
2,987,163 + ECD_02848 0.27 +1.0
2,987,206 + ECD_02848 0.30 -0.4
2,987,207 - ECD_02848 0.30 +0.3
2,987,207 - ECD_02848 0.30 +1.2
2,987,207 - ECD_02848 0.30 +2.4
2,987,209 + ECD_02848 0.30 -0.0
2,987,222 + ECD_02848 0.31 +0.8
2,987,222 + ECD_02848 0.31 +0.2
2,987,355 + ECD_02848 0.40 -0.7
2,987,356 - ECD_02848 0.40 -0.3
2,987,426 + ECD_02848 0.44 +0.3
2,987,426 + ECD_02848 0.44 +0.3
2,987,427 - ECD_02848 0.44 -0.7
2,987,427 - ECD_02848 0.44 +0.9
2,987,427 - ECD_02848 0.44 +0.4
2,987,615 + ECD_02848 0.57 +0.9
2,987,615 + ECD_02848 0.57 -0.9
2,987,615 + ECD_02848 0.57 +3.0
2,987,616 - ECD_02848 0.57 +0.4
2,987,733 + ECD_02848 0.65 -0.0
2,987,733 + ECD_02848 0.65 +0.2

Or see this region's nucleotide sequence