Strain Fitness in Escherichia coli BL21 around ECD_02332

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02331 and ECD_02332 are separated by 95 nucleotidesECD_02332 and ECD_02333 are separated by 206 nucleotidesECD_02333 and ECD_02334 overlap by 14 nucleotides ECD_02331: ECD_02331 - porphyrinogen oxidase, cytoplasmic, at 2,420,680 to 2,421,579 _02331 ECD_02332: ECD_02332 - RpoE-regulated lipoprotein, at 2,421,675 to 2,422,250 _02332 ECD_02333: ECD_02333 - inner membrane protein, at 2,422,457 to 2,422,906 _02333 ECD_02334: ECD_02334 - GNAT family putative N-acetyltransferase, at 2,422,893 to 2,423,318 _02334 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1 2at 2420.717 kb on + strandat 2420.766 kb on + strandat 2420.841 kb on - strand, within ECD_02331at 2420.841 kb on - strand, within ECD_02331at 2421.103 kb on - strand, within ECD_02331at 2421.331 kb on - strand, within ECD_02331at 2421.477 kb on + strand, within ECD_02331at 2421.735 kb on + strand, within ECD_02332at 2421.736 kb on - strand, within ECD_02332at 2421.776 kb on + strand, within ECD_02332at 2421.777 kb on - strand, within ECD_02332at 2421.777 kb on - strand, within ECD_02332at 2421.779 kb on + strand, within ECD_02332at 2421.780 kb on - strand, within ECD_02332at 2422.179 kb on - strand, within ECD_02332at 2422.179 kb on - strand, within ECD_02332at 2422.228 kb on - strandat 2422.228 kb on - strandat 2422.274 kb on - strandat 2422.382 kb on - strandat 2422.632 kb on + strand, within ECD_02333at 2422.638 kb on - strand, within ECD_02333at 2422.638 kb on - strand, within ECD_02333at 2422.826 kb on + strand, within ECD_02333at 2422.827 kb on - strand, within ECD_02333at 2422.966 kb on + strand, within ECD_02334at 2423.107 kb on + strand, within ECD_02334at 2423.108 kb on - strand, within ECD_02334at 2423.108 kb on - strand, within ECD_02334at 2423.108 kb on - strand, within ECD_02334at 2423.210 kb on + strand, within ECD_02334at 2423.211 kb on - strand, within ECD_02334

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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2,420,717 + -0.6
2,420,766 + -0.3
2,420,841 - ECD_02331 0.18 -2.5
2,420,841 - ECD_02331 0.18 -0.2
2,421,103 - ECD_02331 0.47 -0.4
2,421,331 - ECD_02331 0.72 -1.3
2,421,477 + ECD_02331 0.89 +0.2
2,421,735 + ECD_02332 0.10 -0.1
2,421,736 - ECD_02332 0.11 +0.3
2,421,776 + ECD_02332 0.18 +1.5
2,421,777 - ECD_02332 0.18 +0.8
2,421,777 - ECD_02332 0.18 +0.0
2,421,779 + ECD_02332 0.18 +0.3
2,421,780 - ECD_02332 0.18 +0.2
2,422,179 - ECD_02332 0.88 +0.4
2,422,179 - ECD_02332 0.88 +1.6
2,422,228 - +0.1
2,422,228 - +0.6
2,422,274 - +1.5
2,422,382 - +0.1
2,422,632 + ECD_02333 0.39 +0.1
2,422,638 - ECD_02333 0.40 -1.2
2,422,638 - ECD_02333 0.40 -0.8
2,422,826 + ECD_02333 0.82 +0.6
2,422,827 - ECD_02333 0.82 +0.7
2,422,966 + ECD_02334 0.17 -0.1
2,423,107 + ECD_02334 0.50 +1.9
2,423,108 - ECD_02334 0.50 -0.3
2,423,108 - ECD_02334 0.50 +0.3
2,423,108 - ECD_02334 0.50 -0.2
2,423,210 + ECD_02334 0.74 -0.1
2,423,211 - ECD_02334 0.75 -0.6

Or see this region's nucleotide sequence