Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02331 and ECD_02332 are separated by 95 nucleotides ECD_02332 and ECD_02333 are separated by 206 nucleotides ECD_02333 and ECD_02334 overlap by 14 nucleotides
ECD_02331: ECD_02331 - porphyrinogen oxidase, cytoplasmic, at 2,420,680 to 2,421,579
_02331
ECD_02332: ECD_02332 - RpoE-regulated lipoprotein, at 2,421,675 to 2,422,250
_02332
ECD_02333: ECD_02333 - inner membrane protein, at 2,422,457 to 2,422,906
_02333
ECD_02334: ECD_02334 - GNAT family putative N-acetyltransferase, at 2,422,893 to 2,423,318
_02334
Position (kb)
2421
2422
2423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2420.717 kb on + strand at 2420.766 kb on + strand at 2420.841 kb on - strand, within ECD_02331 at 2420.841 kb on - strand, within ECD_02331 at 2421.103 kb on - strand, within ECD_02331 at 2421.331 kb on - strand, within ECD_02331 at 2421.477 kb on + strand, within ECD_02331 at 2421.735 kb on + strand, within ECD_02332 at 2421.736 kb on - strand, within ECD_02332 at 2421.776 kb on + strand, within ECD_02332 at 2421.777 kb on - strand, within ECD_02332 at 2421.777 kb on - strand, within ECD_02332 at 2421.779 kb on + strand, within ECD_02332 at 2421.780 kb on - strand, within ECD_02332 at 2422.179 kb on - strand, within ECD_02332 at 2422.179 kb on - strand, within ECD_02332 at 2422.228 kb on - strand at 2422.228 kb on - strand at 2422.274 kb on - strand at 2422.382 kb on - strand at 2422.632 kb on + strand, within ECD_02333 at 2422.638 kb on - strand, within ECD_02333 at 2422.638 kb on - strand, within ECD_02333 at 2422.826 kb on + strand, within ECD_02333 at 2422.827 kb on - strand, within ECD_02333 at 2422.966 kb on + strand, within ECD_02334 at 2423.107 kb on + strand, within ECD_02334 at 2423.108 kb on - strand, within ECD_02334 at 2423.108 kb on - strand, within ECD_02334 at 2423.108 kb on - strand, within ECD_02334 at 2423.210 kb on + strand, within ECD_02334 at 2423.211 kb on - strand, within ECD_02334
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 2,420,717 + -0.6 2,420,766 + -0.3 2,420,841 - ECD_02331 0.18 -2.5 2,420,841 - ECD_02331 0.18 -0.2 2,421,103 - ECD_02331 0.47 -0.4 2,421,331 - ECD_02331 0.72 -1.3 2,421,477 + ECD_02331 0.89 +0.2 2,421,735 + ECD_02332 0.10 -0.1 2,421,736 - ECD_02332 0.11 +0.3 2,421,776 + ECD_02332 0.18 +1.5 2,421,777 - ECD_02332 0.18 +0.8 2,421,777 - ECD_02332 0.18 +0.0 2,421,779 + ECD_02332 0.18 +0.3 2,421,780 - ECD_02332 0.18 +0.2 2,422,179 - ECD_02332 0.88 +0.4 2,422,179 - ECD_02332 0.88 +1.6 2,422,228 - +0.1 2,422,228 - +0.6 2,422,274 - +1.5 2,422,382 - +0.1 2,422,632 + ECD_02333 0.39 +0.1 2,422,638 - ECD_02333 0.40 -1.2 2,422,638 - ECD_02333 0.40 -0.8 2,422,826 + ECD_02333 0.82 +0.6 2,422,827 - ECD_02333 0.82 +0.7 2,422,966 + ECD_02334 0.17 -0.1 2,423,107 + ECD_02334 0.50 +1.9 2,423,108 - ECD_02334 0.50 -0.3 2,423,108 - ECD_02334 0.50 +0.3 2,423,108 - ECD_02334 0.50 -0.2 2,423,210 + ECD_02334 0.74 -0.1 2,423,211 - ECD_02334 0.75 -0.6
Or see this region's nucleotide sequence