Strain Fitness in Escherichia coli BL21 around ECD_01964

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01963 and ECD_01964 overlap by 4 nucleotidesECD_01964 and ECD_01965 are separated by 2 nucleotidesECD_01965 and ECD_01966 are separated by 92 nucleotides ECD_01963: ECD_01963 - putative glycosyl transferase, at 2,029,860 to 2,031,077 _01963 ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562 _01964 ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404 _01965 ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659 _01966 Position (kb) 2031 2032Strain fitness (log2 ratio) -1 0 1at 2030.123 kb on - strand, within ECD_01963at 2030.244 kb on - strand, within ECD_01963at 2030.252 kb on + strand, within ECD_01963at 2030.252 kb on + strand, within ECD_01963at 2030.253 kb on - strand, within ECD_01963at 2030.253 kb on - strand, within ECD_01963at 2030.253 kb on - strand, within ECD_01963at 2031.349 kb on + strand, within ECD_01964at 2031.353 kb on - strand, within ECD_01964at 2031.509 kb on + strand, within ECD_01964at 2031.642 kb on + strandat 2031.643 kb on - strandat 2031.942 kb on + strand, within ECD_01965at 2031.972 kb on - strand, within ECD_01965at 2032.046 kb on + strand, within ECD_01965at 2032.141 kb on - strand, within ECD_01965at 2032.173 kb on + strand, within ECD_01965at 2032.219 kb on - strand, within ECD_01965at 2032.374 kb on + strandat 2032.376 kb on + strandat 2032.376 kb on + strandat 2032.377 kb on - strandat 2032.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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2,030,123 - ECD_01963 0.22 -0.9
2,030,244 - ECD_01963 0.32 +0.1
2,030,252 + ECD_01963 0.32 +0.7
2,030,252 + ECD_01963 0.32 +1.0
2,030,253 - ECD_01963 0.32 +1.7
2,030,253 - ECD_01963 0.32 -0.2
2,030,253 - ECD_01963 0.32 +0.4
2,031,349 + ECD_01964 0.56 -0.3
2,031,353 - ECD_01964 0.57 -1.1
2,031,509 + ECD_01964 0.89 -0.7
2,031,642 + +1.1
2,031,643 - -0.3
2,031,942 + ECD_01965 0.45 -0.7
2,031,972 - ECD_01965 0.48 -0.9
2,032,046 + ECD_01965 0.57 -0.8
2,032,141 - ECD_01965 0.69 +0.8
2,032,173 + ECD_01965 0.72 -1.0
2,032,219 - ECD_01965 0.78 +0.8
2,032,374 + +0.6
2,032,376 + -0.2
2,032,376 + +0.8
2,032,377 - +0.3
2,032,422 + -1.0

Or see this region's nucleotide sequence