Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00027 and ECD_t00028 are separated by 4 nucleotides ECD_t00028 and ECD_01636 are separated by 107 nucleotides ECD_01636 and ECD_01637 are separated by 125 nucleotides ECD_01637 and ECD_01638 are separated by 11 nucleotides ECD_01638 and ECD_01639 are separated by 3 nucleotides
ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780
_t00027
ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861
_t00028
ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274
_01636
ECD_01637: ECD_01637 - putative oxidoreductase, at 1,692,400 to 1,694,004
_01637
ECD_01638: ECD_01638 - FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex, at 1,694,016 to 1,694,828
_01638
ECD_01639: ECD_01639 - putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex, at 1,694,832 to 1,695,617
_01639
Position (kb)
1692
1693
1694
1695 Strain fitness (log2 ratio)
-1
0
1 at 1691.439 kb on - strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.711 kb on + strand at 1691.711 kb on + strand at 1691.916 kb on + strand at 1691.916 kb on + strand at 1693.165 kb on - strand, within ECD_01637 at 1693.601 kb on + strand, within ECD_01637 at 1694.319 kb on - strand, within ECD_01638
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 1,691,439 - +0.2 1,691,695 + -0.6 1,691,695 + +0.0 1,691,695 + -0.1 1,691,711 + -0.6 1,691,711 + -0.2 1,691,916 + -0.0 1,691,916 + -0.1 1,693,165 - ECD_01637 0.48 +0.9 1,693,601 + ECD_01637 0.75 +0.4 1,694,319 - ECD_01638 0.37 -0.6
Or see this region's nucleotide sequence