Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00636 and ECD_00637 are separated by 202 nucleotides ECD_00637 and ECD_00638 are separated by 576 nucleotides
ECD_00636: ECD_00636 - N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components, at 663,818 to 665,764
_00636
ECD_00637: ECD_00637 - glutamyl-tRNA synthetase, at 665,967 to 667,631
_00637
ECD_00638: ECD_00638 - chitoporin, at 668,208 to 669,614
_00638
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -2
-1
0
1
2 at 665.003 kb on + strand, within ECD_00636 at 665.003 kb on + strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.005 kb on + strand, within ECD_00636 at 665.053 kb on + strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.110 kb on + strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.292 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.524 kb on + strand, within ECD_00636 at 665.564 kb on - strand, within ECD_00636 at 665.592 kb on + strand at 665.680 kb on + strand at 665.920 kb on + strand at 665.928 kb on + strand at 665.928 kb on + strand at 668.213 kb on + strand at 668.231 kb on + strand at 668.342 kb on - strand at 668.342 kb on - strand at 668.344 kb on - strand at 668.344 kb on - strand at 668.558 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.600 kb on - strand, within ECD_00638
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 665,003 + ECD_00636 0.61 +0.2 665,003 + ECD_00636 0.61 +1.0 665,004 - ECD_00636 0.61 +0.1 665,004 - ECD_00636 0.61 -1.0 665,005 + ECD_00636 0.61 +0.1 665,053 + ECD_00636 0.63 +0.6 665,054 - ECD_00636 0.63 -0.2 665,054 - ECD_00636 0.63 -0.8 665,054 - ECD_00636 0.63 +1.0 665,056 + ECD_00636 0.64 +0.0 665,056 + ECD_00636 0.64 -0.5 665,110 + ECD_00636 0.66 +0.0 665,111 - ECD_00636 0.66 +2.3 665,111 - ECD_00636 0.66 +1.6 665,292 + ECD_00636 0.76 +0.1 665,422 + ECD_00636 0.82 -0.6 665,422 + ECD_00636 0.82 +0.2 665,524 + ECD_00636 0.88 -1.0 665,564 - ECD_00636 0.90 +0.5 665,592 + +0.3 665,680 + -1.1 665,920 + -2.1 665,928 + +2.2 665,928 + +0.6 668,213 + +0.9 668,231 + -0.1 668,342 - -1.5 668,342 - -1.5 668,344 - -0.3 668,344 - -0.5 668,558 + ECD_00638 0.25 +0.0 668,599 + ECD_00638 0.28 +0.3 668,599 + ECD_00638 0.28 -0.6 668,600 - ECD_00638 0.28 -0.1
Or see this region's nucleotide sequence