Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00442 and ECD_00443 are separated by 62 nucleotides ECD_00443 and ECD_00444 are separated by 60 nucleotides ECD_00444 and ECD_00445 overlap by 11 nucleotides ECD_00445 and ECD_00446 overlap by 33 nucleotides
ECD_00442: ECD_00442 - iron export ABC transporter permease; peroxide resistance protein, at 485,730 to 486,509
_00442
ECD_00443: ECD_00443 - DnaK co-chaperone, thioredoxin-like protein, at 486,572 to 487,426
_00443
ECD_00444: ECD_00444 - putative oxidoreductase, at 487,487 to 488,296
_00444
ECD_00445: ECD_00445 - acyl-CoA thioesterase 1 and protease I and lysophospholipase L1, at 488,286 to 488,912
_00445
ECD_00446: ECD_00446 - putative ABC transporter ATPase, at 488,880 to 489,566
_00446
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 486.577 kb on - strand at 486.577 kb on - strand at 486.589 kb on - strand at 486.589 kb on - strand at 486.603 kb on + strand at 487.039 kb on - strand, within ECD_00443 at 487.039 kb on - strand, within ECD_00443 at 487.039 kb on - strand, within ECD_00443 at 487.182 kb on + strand, within ECD_00443 at 487.183 kb on - strand, within ECD_00443 at 487.183 kb on - strand, within ECD_00443 at 487.259 kb on - strand, within ECD_00443 at 487.273 kb on - strand, within ECD_00443 at 487.273 kb on - strand, within ECD_00443 at 487.305 kb on - strand, within ECD_00443 at 487.499 kb on + strand at 487.545 kb on - strand at 487.598 kb on - strand, within ECD_00444 at 487.611 kb on - strand, within ECD_00444 at 487.611 kb on - strand, within ECD_00444 at 487.643 kb on - strand, within ECD_00444 at 487.807 kb on - strand, within ECD_00444 at 487.807 kb on - strand, within ECD_00444 at 487.876 kb on + strand, within ECD_00444 at 487.998 kb on + strand, within ECD_00444 at 487.998 kb on + strand, within ECD_00444 at 487.999 kb on - strand, within ECD_00444 at 487.999 kb on - strand, within ECD_00444 at 487.999 kb on - strand, within ECD_00444 at 488.021 kb on - strand, within ECD_00444 at 488.032 kb on - strand, within ECD_00444 at 488.041 kb on + strand, within ECD_00444 at 488.237 kb on - strand at 488.340 kb on - strand at 488.401 kb on + strand, within ECD_00445 at 488.414 kb on + strand, within ECD_00445 at 488.471 kb on + strand, within ECD_00445 at 488.498 kb on - strand, within ECD_00445 at 488.514 kb on + strand, within ECD_00445 at 488.514 kb on + strand, within ECD_00445 at 488.515 kb on - strand, within ECD_00445 at 488.524 kb on - strand, within ECD_00445 at 488.720 kb on + strand, within ECD_00445 at 488.720 kb on + strand, within ECD_00445 at 488.720 kb on + strand, within ECD_00445 at 488.725 kb on - strand, within ECD_00445 at 488.747 kb on + strand, within ECD_00445 at 488.748 kb on - strand, within ECD_00445 at 489.101 kb on - strand, within ECD_00446 at 489.104 kb on + strand, within ECD_00446 at 489.104 kb on + strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.105 kb on - strand, within ECD_00446 at 489.171 kb on - strand, within ECD_00446 at 489.280 kb on + strand, within ECD_00446
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 486,577 - +1.0 486,577 - -0.7 486,589 - -0.9 486,589 - -0.4 486,603 + -3.0 487,039 - ECD_00443 0.55 +0.0 487,039 - ECD_00443 0.55 -0.0 487,039 - ECD_00443 0.55 -0.7 487,182 + ECD_00443 0.71 +0.3 487,183 - ECD_00443 0.71 +0.3 487,183 - ECD_00443 0.71 +0.1 487,259 - ECD_00443 0.80 -1.4 487,273 - ECD_00443 0.82 -0.0 487,273 - ECD_00443 0.82 +0.2 487,305 - ECD_00443 0.86 -0.5 487,499 + -0.6 487,545 - +0.0 487,598 - ECD_00444 0.14 -0.3 487,611 - ECD_00444 0.15 +0.0 487,611 - ECD_00444 0.15 -0.3 487,643 - ECD_00444 0.19 +0.0 487,807 - ECD_00444 0.40 +0.6 487,807 - ECD_00444 0.40 -1.5 487,876 + ECD_00444 0.48 +0.2 487,998 + ECD_00444 0.63 +0.5 487,998 + ECD_00444 0.63 -0.8 487,999 - ECD_00444 0.63 -0.5 487,999 - ECD_00444 0.63 -1.1 487,999 - ECD_00444 0.63 -0.2 488,021 - ECD_00444 0.66 -0.8 488,032 - ECD_00444 0.67 +0.6 488,041 + ECD_00444 0.68 -0.4 488,237 - +0.5 488,340 - +1.2 488,401 + ECD_00445 0.18 +0.6 488,414 + ECD_00445 0.20 +0.0 488,471 + ECD_00445 0.30 +0.4 488,498 - ECD_00445 0.34 +0.2 488,514 + ECD_00445 0.36 +0.3 488,514 + ECD_00445 0.36 +0.2 488,515 - ECD_00445 0.37 -0.7 488,524 - ECD_00445 0.38 -0.4 488,720 + ECD_00445 0.69 +0.9 488,720 + ECD_00445 0.69 +0.8 488,720 + ECD_00445 0.69 -1.3 488,725 - ECD_00445 0.70 +1.4 488,747 + ECD_00445 0.74 +0.3 488,748 - ECD_00445 0.74 +0.2 489,101 - ECD_00446 0.32 +0.7 489,104 + ECD_00446 0.33 +0.5 489,104 + ECD_00446 0.33 +0.6 489,105 - ECD_00446 0.33 +0.3 489,105 - ECD_00446 0.33 -0.7 489,105 - ECD_00446 0.33 -0.8 489,105 - ECD_00446 0.33 +0.2 489,105 - ECD_00446 0.33 +0.6 489,171 - ECD_00446 0.42 -0.9 489,280 + ECD_00446 0.58 -0.4
Or see this region's nucleotide sequence