Strain Fitness in Escherichia coli BL21 around ECD_02707

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02706 and ECD_02707 are separated by 47 nucleotidesECD_02707 and ECD_02708 are separated by 220 nucleotides ECD_02706: ECD_02706 - D-stereospecific phenylhydantoinase, at 2,840,890 to 2,842,275 _02706 ECD_02707: ECD_02707 - putative amino acid kinase, at 2,842,323 to 2,843,255 _02707 ECD_02708: ECD_02708 - XdhC-CoxI family protein with NAD(P)-binding Rossman fold, at 2,843,476 to 2,845,101 _02708 Position (kb) 2842 2843 2844Strain fitness (log2 ratio) -2 -1 0 1 2at 2841.339 kb on + strand, within ECD_02706at 2841.350 kb on + strand, within ECD_02706at 2841.350 kb on + strand, within ECD_02706at 2841.350 kb on + strand, within ECD_02706at 2841.350 kb on + strand, within ECD_02706at 2841.351 kb on - strand, within ECD_02706at 2841.351 kb on - strand, within ECD_02706at 2841.361 kb on + strand, within ECD_02706at 2841.361 kb on + strand, within ECD_02706at 2841.395 kb on + strand, within ECD_02706at 2841.395 kb on + strand, within ECD_02706at 2841.595 kb on + strand, within ECD_02706at 2841.596 kb on - strand, within ECD_02706at 2841.597 kb on + strand, within ECD_02706at 2841.620 kb on + strand, within ECD_02706at 2841.621 kb on - strand, within ECD_02706at 2841.632 kb on - strand, within ECD_02706at 2841.688 kb on + strand, within ECD_02706at 2841.689 kb on - strand, within ECD_02706at 2841.689 kb on - strand, within ECD_02706at 2841.712 kb on + strand, within ECD_02706at 2841.712 kb on + strand, within ECD_02706at 2841.712 kb on + strand, within ECD_02706at 2841.713 kb on - strand, within ECD_02706at 2841.744 kb on + strand, within ECD_02706at 2841.744 kb on + strand, within ECD_02706at 2841.764 kb on + strand, within ECD_02706at 2841.765 kb on - strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.957 kb on + strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.958 kb on - strand, within ECD_02706at 2841.959 kb on + strand, within ECD_02706at 2841.960 kb on - strand, within ECD_02706at 2841.984 kb on - strand, within ECD_02706at 2842.034 kb on + strand, within ECD_02706at 2842.035 kb on - strand, within ECD_02706at 2842.146 kb on + strandat 2842.146 kb on + strandat 2842.147 kb on - strandat 2842.176 kb on - strandat 2842.291 kb on + strandat 2842.291 kb on + strandat 2842.291 kb on + strandat 2842.291 kb on + strandat 2842.291 kb on + strandat 2842.291 kb on + strandat 2842.291 kb on + strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.292 kb on - strandat 2842.293 kb on + strandat 2842.293 kb on + strandat 2842.293 kb on + strandat 2842.294 kb on - strandat 2842.294 kb on - strandat 2842.294 kb on - strandat 2842.426 kb on + strand, within ECD_02707at 2842.487 kb on + strand, within ECD_02707at 2842.561 kb on + strand, within ECD_02707at 2842.561 kb on + strand, within ECD_02707at 2842.562 kb on - strand, within ECD_02707at 2842.562 kb on - strand, within ECD_02707at 2842.562 kb on - strand, within ECD_02707at 2842.572 kb on + strand, within ECD_02707at 2842.573 kb on - strand, within ECD_02707at 2842.573 kb on - strand, within ECD_02707at 2842.573 kb on - strand, within ECD_02707at 2842.573 kb on - strand, within ECD_02707at 2842.573 kb on - strand, within ECD_02707at 2842.574 kb on + strand, within ECD_02707at 2842.574 kb on + strand, within ECD_02707at 2842.574 kb on + strand, within ECD_02707at 2842.574 kb on + strand, within ECD_02707at 2842.574 kb on + strand, within ECD_02707at 2842.574 kb on + strand, within ECD_02707at 2842.575 kb on - strand, within ECD_02707at 2842.575 kb on - strand, within ECD_02707at 2842.575 kb on - strand, within ECD_02707at 2842.575 kb on - strand, within ECD_02707at 2842.575 kb on - strand, within ECD_02707at 2842.588 kb on + strand, within ECD_02707at 2842.588 kb on + strand, within ECD_02707at 2842.588 kb on + strand, within ECD_02707at 2842.588 kb on + strand, within ECD_02707at 2842.589 kb on - strand, within ECD_02707at 2842.628 kb on + strand, within ECD_02707at 2842.631 kb on + strand, within ECD_02707at 2842.631 kb on + strand, within ECD_02707at 2842.631 kb on + strand, within ECD_02707at 2842.632 kb on - strand, within ECD_02707at 2842.632 kb on - strand, within ECD_02707at 2842.639 kb on + strand, within ECD_02707at 2842.855 kb on + strand, within ECD_02707at 2842.916 kb on + strand, within ECD_02707at 2842.917 kb on - strand, within ECD_02707at 2842.994 kb on + strand, within ECD_02707at 2843.077 kb on + strand, within ECD_02707at 2843.077 kb on + strand, within ECD_02707at 2843.077 kb on + strand, within ECD_02707at 2843.077 kb on + strand, within ECD_02707at 2843.077 kb on + strand, within ECD_02707at 2843.077 kb on + strand, within ECD_02707at 2843.078 kb on - strand, within ECD_02707at 2843.078 kb on - strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.126 kb on + strand, within ECD_02707at 2843.127 kb on - strand, within ECD_02707at 2843.127 kb on - strand, within ECD_02707at 2843.135 kb on + strand, within ECD_02707at 2843.276 kb on + strandat 2843.276 kb on + strandat 2843.276 kb on + strandat 2843.276 kb on + strandat 2843.302 kb on - strandat 2843.302 kb on - strandat 2843.371 kb on + strandat 2843.454 kb on - strandat 2843.457 kb on - strandat 2843.477 kb on + strandat 2843.478 kb on - strandat 2843.478 kb on - strandat 2843.545 kb on + strandat 2843.545 kb on + strandat 2843.817 kb on + strand, within ECD_02708at 2843.821 kb on - strand, within ECD_02708at 2843.821 kb on - strand, within ECD_02708at 2843.839 kb on - strand, within ECD_02708at 2843.862 kb on - strand, within ECD_02708at 2843.862 kb on - strand, within ECD_02708at 2843.862 kb on - strand, within ECD_02708at 2843.862 kb on - strand, within ECD_02708at 2843.928 kb on + strand, within ECD_02708at 2843.929 kb on - strand, within ECD_02708at 2843.953 kb on + strand, within ECD_02708at 2843.954 kb on - strand, within ECD_02708at 2843.965 kb on - strand, within ECD_02708at 2843.965 kb on - strand, within ECD_02708at 2844.001 kb on - strand, within ECD_02708at 2844.055 kb on + strand, within ECD_02708at 2844.055 kb on + strand, within ECD_02708at 2844.055 kb on + strand, within ECD_02708at 2844.056 kb on - strand, within ECD_02708at 2844.056 kb on - strand, within ECD_02708at 2844.056 kb on - strand, within ECD_02708at 2844.181 kb on - strand, within ECD_02708at 2844.181 kb on - strand, within ECD_02708at 2844.181 kb on - strand, within ECD_02708at 2844.226 kb on - strand, within ECD_02708at 2844.239 kb on + strand, within ECD_02708at 2844.239 kb on + strand, within ECD_02708at 2844.240 kb on - strand, within ECD_02708at 2844.240 kb on - strand, within ECD_02708at 2844.248 kb on - strand, within ECD_02708at 2844.248 kb on - strand, within ECD_02708at 2844.248 kb on - strand, within ECD_02708

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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2,841,339 + ECD_02706 0.32 +0.8
2,841,350 + ECD_02706 0.33 +0.3
2,841,350 + ECD_02706 0.33 -0.1
2,841,350 + ECD_02706 0.33 +0.3
2,841,350 + ECD_02706 0.33 -0.2
2,841,351 - ECD_02706 0.33 +0.8
2,841,351 - ECD_02706 0.33 -0.2
2,841,361 + ECD_02706 0.34 -0.2
2,841,361 + ECD_02706 0.34 -0.1
2,841,395 + ECD_02706 0.36 -0.4
2,841,395 + ECD_02706 0.36 -0.2
2,841,595 + ECD_02706 0.51 -1.4
2,841,596 - ECD_02706 0.51 -1.1
2,841,597 + ECD_02706 0.51 +0.0
2,841,620 + ECD_02706 0.53 +0.3
2,841,621 - ECD_02706 0.53 -1.8
2,841,632 - ECD_02706 0.54 -0.2
2,841,688 + ECD_02706 0.58 -2.0
2,841,689 - ECD_02706 0.58 +0.3
2,841,689 - ECD_02706 0.58 -0.9
2,841,712 + ECD_02706 0.59 +0.4
2,841,712 + ECD_02706 0.59 -1.9
2,841,712 + ECD_02706 0.59 +0.6
2,841,713 - ECD_02706 0.59 -0.7
2,841,744 + ECD_02706 0.62 -0.4
2,841,744 + ECD_02706 0.62 -0.5
2,841,764 + ECD_02706 0.63 +0.5
2,841,765 - ECD_02706 0.63 -0.2
2,841,957 + ECD_02706 0.77 -2.5
2,841,957 + ECD_02706 0.77 -0.1
2,841,957 + ECD_02706 0.77 +1.6
2,841,957 + ECD_02706 0.77 -0.6
2,841,957 + ECD_02706 0.77 -1.1
2,841,957 + ECD_02706 0.77 -0.4
2,841,957 + ECD_02706 0.77 -0.3
2,841,957 + ECD_02706 0.77 +0.7
2,841,957 + ECD_02706 0.77 +0.2
2,841,958 - ECD_02706 0.77 -1.2
2,841,958 - ECD_02706 0.77 +2.7
2,841,958 - ECD_02706 0.77 -0.2
2,841,958 - ECD_02706 0.77 -0.4
2,841,958 - ECD_02706 0.77 +0.4
2,841,958 - ECD_02706 0.77 +0.6
2,841,958 - ECD_02706 0.77 +0.0
2,841,958 - ECD_02706 0.77 -0.4
2,841,958 - ECD_02706 0.77 +0.9
2,841,958 - ECD_02706 0.77 +0.3
2,841,958 - ECD_02706 0.77 -0.2
2,841,958 - ECD_02706 0.77 +0.3
2,841,958 - ECD_02706 0.77 +0.2
2,841,958 - ECD_02706 0.77 -0.9
2,841,958 - ECD_02706 0.77 -0.7
2,841,958 - ECD_02706 0.77 -1.0
2,841,959 + ECD_02706 0.77 +0.9
2,841,960 - ECD_02706 0.77 +0.3
2,841,984 - ECD_02706 0.79 -0.0
2,842,034 + ECD_02706 0.83 -0.2
2,842,035 - ECD_02706 0.83 -0.6
2,842,146 + -0.9
2,842,146 + +0.0
2,842,147 - +0.0
2,842,176 - -0.3
2,842,291 + +0.3
2,842,291 + -0.1
2,842,291 + +0.3
2,842,291 + -1.5
2,842,291 + +0.0
2,842,291 + -0.4
2,842,291 + +0.3
2,842,292 - +0.9
2,842,292 - +0.8
2,842,292 - -0.3
2,842,292 - -0.6
2,842,292 - +1.2
2,842,292 - -1.9
2,842,292 - +0.4
2,842,292 - +0.2
2,842,292 - +0.4
2,842,292 - +0.4
2,842,293 + -0.2
2,842,293 + -0.7
2,842,293 + +0.1
2,842,294 - -0.2
2,842,294 - +0.8
2,842,294 - +0.4
2,842,426 + ECD_02707 0.11 +1.0
2,842,487 + ECD_02707 0.18 -0.3
2,842,561 + ECD_02707 0.26 +0.0
2,842,561 + ECD_02707 0.26 -0.6
2,842,562 - ECD_02707 0.26 -0.3
2,842,562 - ECD_02707 0.26 +0.7
2,842,562 - ECD_02707 0.26 -0.0
2,842,572 + ECD_02707 0.27 -0.1
2,842,573 - ECD_02707 0.27 -0.3
2,842,573 - ECD_02707 0.27 -0.1
2,842,573 - ECD_02707 0.27 +0.4
2,842,573 - ECD_02707 0.27 +0.5
2,842,573 - ECD_02707 0.27 +0.1
2,842,574 + ECD_02707 0.27 -1.3
2,842,574 + ECD_02707 0.27 +0.1
2,842,574 + ECD_02707 0.27 -0.1
2,842,574 + ECD_02707 0.27 +0.9
2,842,574 + ECD_02707 0.27 -0.4
2,842,574 + ECD_02707 0.27 -1.1
2,842,575 - ECD_02707 0.27 +0.2
2,842,575 - ECD_02707 0.27 -0.5
2,842,575 - ECD_02707 0.27 +0.1
2,842,575 - ECD_02707 0.27 -0.4
2,842,575 - ECD_02707 0.27 -0.5
2,842,588 + ECD_02707 0.28 -0.1
2,842,588 + ECD_02707 0.28 -0.2
2,842,588 + ECD_02707 0.28 +0.3
2,842,588 + ECD_02707 0.28 -0.0
2,842,589 - ECD_02707 0.29 +1.0
2,842,628 + ECD_02707 0.33 +0.7
2,842,631 + ECD_02707 0.33 -0.4
2,842,631 + ECD_02707 0.33 -0.1
2,842,631 + ECD_02707 0.33 -0.7
2,842,632 - ECD_02707 0.33 -1.3
2,842,632 - ECD_02707 0.33 -0.2
2,842,639 + ECD_02707 0.34 -0.6
2,842,855 + ECD_02707 0.57 -0.6
2,842,916 + ECD_02707 0.64 -0.4
2,842,917 - ECD_02707 0.64 +0.7
2,842,994 + ECD_02707 0.72 -1.6
2,843,077 + ECD_02707 0.81 -1.0
2,843,077 + ECD_02707 0.81 -1.7
2,843,077 + ECD_02707 0.81 -0.3
2,843,077 + ECD_02707 0.81 -1.0
2,843,077 + ECD_02707 0.81 -1.4
2,843,077 + ECD_02707 0.81 +0.1
2,843,078 - ECD_02707 0.81 -0.3
2,843,078 - ECD_02707 0.81 -0.2
2,843,126 + ECD_02707 0.86 +0.8
2,843,126 + ECD_02707 0.86 -0.3
2,843,126 + ECD_02707 0.86 +1.1
2,843,126 + ECD_02707 0.86 +0.9
2,843,126 + ECD_02707 0.86 +1.5
2,843,126 + ECD_02707 0.86 -0.3
2,843,126 + ECD_02707 0.86 +0.3
2,843,126 + ECD_02707 0.86 +0.9
2,843,127 - ECD_02707 0.86 -1.8
2,843,127 - ECD_02707 0.86 -0.7
2,843,135 + ECD_02707 0.87 -0.7
2,843,276 + +0.7
2,843,276 + -0.1
2,843,276 + -0.1
2,843,276 + +0.1
2,843,302 - -0.1
2,843,302 - +0.2
2,843,371 + -0.1
2,843,454 - +0.3
2,843,457 - -0.9
2,843,477 + +0.4
2,843,478 - +0.3
2,843,478 - +0.0
2,843,545 + +0.2
2,843,545 + +0.3
2,843,817 + ECD_02708 0.21 +0.4
2,843,821 - ECD_02708 0.21 -0.4
2,843,821 - ECD_02708 0.21 -0.3
2,843,839 - ECD_02708 0.22 -1.8
2,843,862 - ECD_02708 0.24 -0.5
2,843,862 - ECD_02708 0.24 -0.6
2,843,862 - ECD_02708 0.24 -0.1
2,843,862 - ECD_02708 0.24 -0.2
2,843,928 + ECD_02708 0.28 -0.7
2,843,929 - ECD_02708 0.28 -0.0
2,843,953 + ECD_02708 0.29 -0.5
2,843,954 - ECD_02708 0.29 -0.0
2,843,965 - ECD_02708 0.30 +0.1
2,843,965 - ECD_02708 0.30 -0.6
2,844,001 - ECD_02708 0.32 +0.2
2,844,055 + ECD_02708 0.36 +0.2
2,844,055 + ECD_02708 0.36 +0.1
2,844,055 + ECD_02708 0.36 -0.5
2,844,056 - ECD_02708 0.36 +0.1
2,844,056 - ECD_02708 0.36 -0.2
2,844,056 - ECD_02708 0.36 +0.7
2,844,181 - ECD_02708 0.43 +0.7
2,844,181 - ECD_02708 0.43 +0.1
2,844,181 - ECD_02708 0.43 +0.3
2,844,226 - ECD_02708 0.46 +0.4
2,844,239 + ECD_02708 0.47 -0.1
2,844,239 + ECD_02708 0.47 +0.7
2,844,240 - ECD_02708 0.47 +0.9
2,844,240 - ECD_02708 0.47 -0.0
2,844,248 - ECD_02708 0.47 +0.9
2,844,248 - ECD_02708 0.47 -0.3
2,844,248 - ECD_02708 0.47 +0.0

Or see this region's nucleotide sequence