Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02706 and ECD_02707 are separated by 47 nucleotides ECD_02707 and ECD_02708 are separated by 220 nucleotides
ECD_02706: ECD_02706 - D-stereospecific phenylhydantoinase, at 2,840,890 to 2,842,275
_02706
ECD_02707: ECD_02707 - putative amino acid kinase, at 2,842,323 to 2,843,255
_02707
ECD_02708: ECD_02708 - XdhC-CoxI family protein with NAD(P)-binding Rossman fold, at 2,843,476 to 2,845,101
_02708
Position (kb)
2842
2843
2844 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2841.339 kb on + strand, within ECD_02706 at 2841.350 kb on + strand, within ECD_02706 at 2841.350 kb on + strand, within ECD_02706 at 2841.350 kb on + strand, within ECD_02706 at 2841.350 kb on + strand, within ECD_02706 at 2841.351 kb on - strand, within ECD_02706 at 2841.351 kb on - strand, within ECD_02706 at 2841.361 kb on + strand, within ECD_02706 at 2841.361 kb on + strand, within ECD_02706 at 2841.395 kb on + strand, within ECD_02706 at 2841.395 kb on + strand, within ECD_02706 at 2841.595 kb on + strand, within ECD_02706 at 2841.596 kb on - strand, within ECD_02706 at 2841.597 kb on + strand, within ECD_02706 at 2841.620 kb on + strand, within ECD_02706 at 2841.621 kb on - strand, within ECD_02706 at 2841.632 kb on - strand, within ECD_02706 at 2841.688 kb on + strand, within ECD_02706 at 2841.689 kb on - strand, within ECD_02706 at 2841.689 kb on - strand, within ECD_02706 at 2841.712 kb on + strand, within ECD_02706 at 2841.712 kb on + strand, within ECD_02706 at 2841.712 kb on + strand, within ECD_02706 at 2841.713 kb on - strand, within ECD_02706 at 2841.744 kb on + strand, within ECD_02706 at 2841.744 kb on + strand, within ECD_02706 at 2841.764 kb on + strand, within ECD_02706 at 2841.765 kb on - strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.957 kb on + strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.958 kb on - strand, within ECD_02706 at 2841.959 kb on + strand, within ECD_02706 at 2841.960 kb on - strand, within ECD_02706 at 2841.984 kb on - strand, within ECD_02706 at 2842.034 kb on + strand, within ECD_02706 at 2842.035 kb on - strand, within ECD_02706 at 2842.146 kb on + strand at 2842.146 kb on + strand at 2842.147 kb on - strand at 2842.176 kb on - strand at 2842.291 kb on + strand at 2842.291 kb on + strand at 2842.291 kb on + strand at 2842.291 kb on + strand at 2842.291 kb on + strand at 2842.291 kb on + strand at 2842.291 kb on + strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.292 kb on - strand at 2842.293 kb on + strand at 2842.293 kb on + strand at 2842.293 kb on + strand at 2842.294 kb on - strand at 2842.294 kb on - strand at 2842.294 kb on - strand at 2842.426 kb on + strand, within ECD_02707 at 2842.487 kb on + strand, within ECD_02707 at 2842.561 kb on + strand, within ECD_02707 at 2842.561 kb on + strand, within ECD_02707 at 2842.562 kb on - strand, within ECD_02707 at 2842.562 kb on - strand, within ECD_02707 at 2842.562 kb on - strand, within ECD_02707 at 2842.572 kb on + strand, within ECD_02707 at 2842.573 kb on - strand, within ECD_02707 at 2842.573 kb on - strand, within ECD_02707 at 2842.573 kb on - strand, within ECD_02707 at 2842.573 kb on - strand, within ECD_02707 at 2842.573 kb on - strand, within ECD_02707 at 2842.574 kb on + strand, within ECD_02707 at 2842.574 kb on + strand, within ECD_02707 at 2842.574 kb on + strand, within ECD_02707 at 2842.574 kb on + strand, within ECD_02707 at 2842.574 kb on + strand, within ECD_02707 at 2842.574 kb on + strand, within ECD_02707 at 2842.575 kb on - strand, within ECD_02707 at 2842.575 kb on - strand, within ECD_02707 at 2842.575 kb on - strand, within ECD_02707 at 2842.575 kb on - strand, within ECD_02707 at 2842.575 kb on - strand, within ECD_02707 at 2842.588 kb on + strand, within ECD_02707 at 2842.588 kb on + strand, within ECD_02707 at 2842.588 kb on + strand, within ECD_02707 at 2842.588 kb on + strand, within ECD_02707 at 2842.589 kb on - strand, within ECD_02707 at 2842.628 kb on + strand, within ECD_02707 at 2842.631 kb on + strand, within ECD_02707 at 2842.631 kb on + strand, within ECD_02707 at 2842.631 kb on + strand, within ECD_02707 at 2842.632 kb on - strand, within ECD_02707 at 2842.632 kb on - strand, within ECD_02707 at 2842.639 kb on + strand, within ECD_02707 at 2842.855 kb on + strand, within ECD_02707 at 2842.916 kb on + strand, within ECD_02707 at 2842.917 kb on - strand, within ECD_02707 at 2842.994 kb on + strand, within ECD_02707 at 2843.077 kb on + strand, within ECD_02707 at 2843.077 kb on + strand, within ECD_02707 at 2843.077 kb on + strand, within ECD_02707 at 2843.077 kb on + strand, within ECD_02707 at 2843.077 kb on + strand, within ECD_02707 at 2843.077 kb on + strand, within ECD_02707 at 2843.078 kb on - strand, within ECD_02707 at 2843.078 kb on - strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.126 kb on + strand, within ECD_02707 at 2843.127 kb on - strand, within ECD_02707 at 2843.127 kb on - strand, within ECD_02707 at 2843.135 kb on + strand, within ECD_02707 at 2843.276 kb on + strand at 2843.276 kb on + strand at 2843.276 kb on + strand at 2843.276 kb on + strand at 2843.302 kb on - strand at 2843.302 kb on - strand at 2843.371 kb on + strand at 2843.454 kb on - strand at 2843.457 kb on - strand at 2843.477 kb on + strand at 2843.478 kb on - strand at 2843.478 kb on - strand at 2843.545 kb on + strand at 2843.545 kb on + strand at 2843.817 kb on + strand, within ECD_02708 at 2843.821 kb on - strand, within ECD_02708 at 2843.821 kb on - strand, within ECD_02708 at 2843.839 kb on - strand, within ECD_02708 at 2843.862 kb on - strand, within ECD_02708 at 2843.862 kb on - strand, within ECD_02708 at 2843.862 kb on - strand, within ECD_02708 at 2843.862 kb on - strand, within ECD_02708 at 2843.928 kb on + strand, within ECD_02708 at 2843.929 kb on - strand, within ECD_02708 at 2843.953 kb on + strand, within ECD_02708 at 2843.954 kb on - strand, within ECD_02708 at 2843.965 kb on - strand, within ECD_02708 at 2843.965 kb on - strand, within ECD_02708 at 2844.001 kb on - strand, within ECD_02708 at 2844.055 kb on + strand, within ECD_02708 at 2844.055 kb on + strand, within ECD_02708 at 2844.055 kb on + strand, within ECD_02708 at 2844.056 kb on - strand, within ECD_02708 at 2844.056 kb on - strand, within ECD_02708 at 2844.056 kb on - strand, within ECD_02708 at 2844.181 kb on - strand, within ECD_02708 at 2844.181 kb on - strand, within ECD_02708 at 2844.181 kb on - strand, within ECD_02708 at 2844.226 kb on - strand, within ECD_02708 at 2844.239 kb on + strand, within ECD_02708 at 2844.239 kb on + strand, within ECD_02708 at 2844.240 kb on - strand, within ECD_02708 at 2844.240 kb on - strand, within ECD_02708 at 2844.248 kb on - strand, within ECD_02708 at 2844.248 kb on - strand, within ECD_02708 at 2844.248 kb on - strand, within ECD_02708
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 2,841,339 + ECD_02706 0.32 +0.8 2,841,350 + ECD_02706 0.33 +0.3 2,841,350 + ECD_02706 0.33 -0.1 2,841,350 + ECD_02706 0.33 +0.3 2,841,350 + ECD_02706 0.33 -0.2 2,841,351 - ECD_02706 0.33 +0.8 2,841,351 - ECD_02706 0.33 -0.2 2,841,361 + ECD_02706 0.34 -0.2 2,841,361 + ECD_02706 0.34 -0.1 2,841,395 + ECD_02706 0.36 -0.4 2,841,395 + ECD_02706 0.36 -0.2 2,841,595 + ECD_02706 0.51 -1.4 2,841,596 - ECD_02706 0.51 -1.1 2,841,597 + ECD_02706 0.51 +0.0 2,841,620 + ECD_02706 0.53 +0.3 2,841,621 - ECD_02706 0.53 -1.8 2,841,632 - ECD_02706 0.54 -0.2 2,841,688 + ECD_02706 0.58 -2.0 2,841,689 - ECD_02706 0.58 +0.3 2,841,689 - ECD_02706 0.58 -0.9 2,841,712 + ECD_02706 0.59 +0.4 2,841,712 + ECD_02706 0.59 -1.9 2,841,712 + ECD_02706 0.59 +0.6 2,841,713 - ECD_02706 0.59 -0.7 2,841,744 + ECD_02706 0.62 -0.4 2,841,744 + ECD_02706 0.62 -0.5 2,841,764 + ECD_02706 0.63 +0.5 2,841,765 - ECD_02706 0.63 -0.2 2,841,957 + ECD_02706 0.77 -2.5 2,841,957 + ECD_02706 0.77 -0.1 2,841,957 + ECD_02706 0.77 +1.6 2,841,957 + ECD_02706 0.77 -0.6 2,841,957 + ECD_02706 0.77 -1.1 2,841,957 + ECD_02706 0.77 -0.4 2,841,957 + ECD_02706 0.77 -0.3 2,841,957 + ECD_02706 0.77 +0.7 2,841,957 + ECD_02706 0.77 +0.2 2,841,958 - ECD_02706 0.77 -1.2 2,841,958 - ECD_02706 0.77 +2.7 2,841,958 - ECD_02706 0.77 -0.2 2,841,958 - ECD_02706 0.77 -0.4 2,841,958 - ECD_02706 0.77 +0.4 2,841,958 - ECD_02706 0.77 +0.6 2,841,958 - ECD_02706 0.77 +0.0 2,841,958 - ECD_02706 0.77 -0.4 2,841,958 - ECD_02706 0.77 +0.9 2,841,958 - ECD_02706 0.77 +0.3 2,841,958 - ECD_02706 0.77 -0.2 2,841,958 - ECD_02706 0.77 +0.3 2,841,958 - ECD_02706 0.77 +0.2 2,841,958 - ECD_02706 0.77 -0.9 2,841,958 - ECD_02706 0.77 -0.7 2,841,958 - ECD_02706 0.77 -1.0 2,841,959 + ECD_02706 0.77 +0.9 2,841,960 - ECD_02706 0.77 +0.3 2,841,984 - ECD_02706 0.79 -0.0 2,842,034 + ECD_02706 0.83 -0.2 2,842,035 - ECD_02706 0.83 -0.6 2,842,146 + -0.9 2,842,146 + +0.0 2,842,147 - +0.0 2,842,176 - -0.3 2,842,291 + +0.3 2,842,291 + -0.1 2,842,291 + +0.3 2,842,291 + -1.5 2,842,291 + +0.0 2,842,291 + -0.4 2,842,291 + +0.3 2,842,292 - +0.9 2,842,292 - +0.8 2,842,292 - -0.3 2,842,292 - -0.6 2,842,292 - +1.2 2,842,292 - -1.9 2,842,292 - +0.4 2,842,292 - +0.2 2,842,292 - +0.4 2,842,292 - +0.4 2,842,293 + -0.2 2,842,293 + -0.7 2,842,293 + +0.1 2,842,294 - -0.2 2,842,294 - +0.8 2,842,294 - +0.4 2,842,426 + ECD_02707 0.11 +1.0 2,842,487 + ECD_02707 0.18 -0.3 2,842,561 + ECD_02707 0.26 +0.0 2,842,561 + ECD_02707 0.26 -0.6 2,842,562 - ECD_02707 0.26 -0.3 2,842,562 - ECD_02707 0.26 +0.7 2,842,562 - ECD_02707 0.26 -0.0 2,842,572 + ECD_02707 0.27 -0.1 2,842,573 - ECD_02707 0.27 -0.3 2,842,573 - ECD_02707 0.27 -0.1 2,842,573 - ECD_02707 0.27 +0.4 2,842,573 - ECD_02707 0.27 +0.5 2,842,573 - ECD_02707 0.27 +0.1 2,842,574 + ECD_02707 0.27 -1.3 2,842,574 + ECD_02707 0.27 +0.1 2,842,574 + ECD_02707 0.27 -0.1 2,842,574 + ECD_02707 0.27 +0.9 2,842,574 + ECD_02707 0.27 -0.4 2,842,574 + ECD_02707 0.27 -1.1 2,842,575 - ECD_02707 0.27 +0.2 2,842,575 - ECD_02707 0.27 -0.5 2,842,575 - ECD_02707 0.27 +0.1 2,842,575 - ECD_02707 0.27 -0.4 2,842,575 - ECD_02707 0.27 -0.5 2,842,588 + ECD_02707 0.28 -0.1 2,842,588 + ECD_02707 0.28 -0.2 2,842,588 + ECD_02707 0.28 +0.3 2,842,588 + ECD_02707 0.28 -0.0 2,842,589 - ECD_02707 0.29 +1.0 2,842,628 + ECD_02707 0.33 +0.7 2,842,631 + ECD_02707 0.33 -0.4 2,842,631 + ECD_02707 0.33 -0.1 2,842,631 + ECD_02707 0.33 -0.7 2,842,632 - ECD_02707 0.33 -1.3 2,842,632 - ECD_02707 0.33 -0.2 2,842,639 + ECD_02707 0.34 -0.6 2,842,855 + ECD_02707 0.57 -0.6 2,842,916 + ECD_02707 0.64 -0.4 2,842,917 - ECD_02707 0.64 +0.7 2,842,994 + ECD_02707 0.72 -1.6 2,843,077 + ECD_02707 0.81 -1.0 2,843,077 + ECD_02707 0.81 -1.7 2,843,077 + ECD_02707 0.81 -0.3 2,843,077 + ECD_02707 0.81 -1.0 2,843,077 + ECD_02707 0.81 -1.4 2,843,077 + ECD_02707 0.81 +0.1 2,843,078 - ECD_02707 0.81 -0.3 2,843,078 - ECD_02707 0.81 -0.2 2,843,126 + ECD_02707 0.86 +0.8 2,843,126 + ECD_02707 0.86 -0.3 2,843,126 + ECD_02707 0.86 +1.1 2,843,126 + ECD_02707 0.86 +0.9 2,843,126 + ECD_02707 0.86 +1.5 2,843,126 + ECD_02707 0.86 -0.3 2,843,126 + ECD_02707 0.86 +0.3 2,843,126 + ECD_02707 0.86 +0.9 2,843,127 - ECD_02707 0.86 -1.8 2,843,127 - ECD_02707 0.86 -0.7 2,843,135 + ECD_02707 0.87 -0.7 2,843,276 + +0.7 2,843,276 + -0.1 2,843,276 + -0.1 2,843,276 + +0.1 2,843,302 - -0.1 2,843,302 - +0.2 2,843,371 + -0.1 2,843,454 - +0.3 2,843,457 - -0.9 2,843,477 + +0.4 2,843,478 - +0.3 2,843,478 - +0.0 2,843,545 + +0.2 2,843,545 + +0.3 2,843,817 + ECD_02708 0.21 +0.4 2,843,821 - ECD_02708 0.21 -0.4 2,843,821 - ECD_02708 0.21 -0.3 2,843,839 - ECD_02708 0.22 -1.8 2,843,862 - ECD_02708 0.24 -0.5 2,843,862 - ECD_02708 0.24 -0.6 2,843,862 - ECD_02708 0.24 -0.1 2,843,862 - ECD_02708 0.24 -0.2 2,843,928 + ECD_02708 0.28 -0.7 2,843,929 - ECD_02708 0.28 -0.0 2,843,953 + ECD_02708 0.29 -0.5 2,843,954 - ECD_02708 0.29 -0.0 2,843,965 - ECD_02708 0.30 +0.1 2,843,965 - ECD_02708 0.30 -0.6 2,844,001 - ECD_02708 0.32 +0.2 2,844,055 + ECD_02708 0.36 +0.2 2,844,055 + ECD_02708 0.36 +0.1 2,844,055 + ECD_02708 0.36 -0.5 2,844,056 - ECD_02708 0.36 +0.1 2,844,056 - ECD_02708 0.36 -0.2 2,844,056 - ECD_02708 0.36 +0.7 2,844,181 - ECD_02708 0.43 +0.7 2,844,181 - ECD_02708 0.43 +0.1 2,844,181 - ECD_02708 0.43 +0.3 2,844,226 - ECD_02708 0.46 +0.4 2,844,239 + ECD_02708 0.47 -0.1 2,844,239 + ECD_02708 0.47 +0.7 2,844,240 - ECD_02708 0.47 +0.9 2,844,240 - ECD_02708 0.47 -0.0 2,844,248 - ECD_02708 0.47 +0.9 2,844,248 - ECD_02708 0.47 -0.3 2,844,248 - ECD_02708 0.47 +0.0
Or see this region's nucleotide sequence