Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01982 and ECD_01983 overlap by 4 nucleotides ECD_01983 and ECD_01984 overlap by 4 nucleotides ECD_01984 and ECD_01985 are separated by 190 nucleotides
ECD_01982: ECD_01982 - putative citrate/iron-citrate/zinc-citrate efflux transporter, at 2,060,385 to 2,061,800
_01982
ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200
_01983
ECD_01984: ECD_01984 - response regulator in two-component regulatory system with BaeS, at 2,063,197 to 2,063,919
_01984
ECD_01985: ECD_01985 - UPF0339 family protein, at 2,064,110 to 2,064,442
_01985
Position (kb)
2061
2062
2063
2064 Strain fitness (log2 ratio)
-1
0
1 at 2061.106 kb on - strand, within ECD_01982 at 2061.377 kb on - strand, within ECD_01982 at 2061.576 kb on - strand, within ECD_01982 at 2061.685 kb on - strand at 2061.874 kb on + strand at 2061.920 kb on + strand at 2061.934 kb on + strand at 2061.948 kb on + strand, within ECD_01983 at 2062.537 kb on + strand, within ECD_01983 at 2062.610 kb on - strand, within ECD_01983 at 2062.654 kb on + strand, within ECD_01983 at 2063.108 kb on - strand at 2063.108 kb on - strand at 2063.299 kb on + strand, within ECD_01984 at 2064.007 kb on - strand at 2064.068 kb on + strand at 2064.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 2,061,106 - ECD_01982 0.51 +0.3 2,061,377 - ECD_01982 0.70 +0.2 2,061,576 - ECD_01982 0.84 +0.9 2,061,685 - +0.5 2,061,874 + +1.1 2,061,920 + -0.4 2,061,934 + -1.3 2,061,948 + ECD_01983 0.11 +1.3 2,062,537 + ECD_01983 0.53 -0.2 2,062,610 - ECD_01983 0.58 +1.0 2,062,654 + ECD_01983 0.61 +0.5 2,063,108 - +0.4 2,063,108 - +1.3 2,063,299 + ECD_01984 0.14 -0.0 2,064,007 - -0.0 2,064,068 + +0.6 2,064,068 + -0.2
Or see this region's nucleotide sequence