Strain Fitness in Escherichia coli BL21 around ECD_01983

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01982 and ECD_01983 overlap by 4 nucleotidesECD_01983 and ECD_01984 overlap by 4 nucleotidesECD_01984 and ECD_01985 are separated by 190 nucleotides ECD_01982: ECD_01982 - putative citrate/iron-citrate/zinc-citrate efflux transporter, at 2,060,385 to 2,061,800 _01982 ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200 _01983 ECD_01984: ECD_01984 - response regulator in two-component regulatory system with BaeS, at 2,063,197 to 2,063,919 _01984 ECD_01985: ECD_01985 - UPF0339 family protein, at 2,064,110 to 2,064,442 _01985 Position (kb) 2061 2062 2063 2064Strain fitness (log2 ratio) -1 0 1at 2061.106 kb on - strand, within ECD_01982at 2061.377 kb on - strand, within ECD_01982at 2061.576 kb on - strand, within ECD_01982at 2061.685 kb on - strandat 2061.874 kb on + strandat 2061.920 kb on + strandat 2061.934 kb on + strandat 2061.948 kb on + strand, within ECD_01983at 2062.537 kb on + strand, within ECD_01983at 2062.610 kb on - strand, within ECD_01983at 2062.654 kb on + strand, within ECD_01983at 2063.108 kb on - strandat 2063.108 kb on - strandat 2063.299 kb on + strand, within ECD_01984at 2064.007 kb on - strandat 2064.068 kb on + strandat 2064.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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2,061,106 - ECD_01982 0.51 +0.3
2,061,377 - ECD_01982 0.70 +0.2
2,061,576 - ECD_01982 0.84 +0.9
2,061,685 - +0.5
2,061,874 + +1.1
2,061,920 + -0.4
2,061,934 + -1.3
2,061,948 + ECD_01983 0.11 +1.3
2,062,537 + ECD_01983 0.53 -0.2
2,062,610 - ECD_01983 0.58 +1.0
2,062,654 + ECD_01983 0.61 +0.5
2,063,108 - +0.4
2,063,108 - +1.3
2,063,299 + ECD_01984 0.14 -0.0
2,064,007 - -0.0
2,064,068 + +0.6
2,064,068 + -0.2

Or see this region's nucleotide sequence