Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01917 and ECD_01918 are separated by 266 nucleotides ECD_01918 and ECD_01919 are separated by 45 nucleotides ECD_01919 and ECD_04330 are separated by 129 nucleotides
ECD_01917: ECD_01917 - putrescine importer, low affinity, at 1,981,948 to 1,983,306
_01917
ECD_01918: ECD_01918 - LysR family putative transcriptional regulator, at 1,983,573 to 1,984,502
_01918
ECD_01919: ECD_01919 - putative epimerase, at 1,984,548 to 1,985,372
_01919
ECD_04330: ECD_04330 - toxin of the YoeB-YefM toxin-antitoxin system, at 1,985,502 to 1,985,630
_04330
Position (kb)
1983
1984
1985 Strain fitness (log2 ratio)
-2
-1
0
1 at 1982.834 kb on - strand, within ECD_01917 at 1982.866 kb on - strand, within ECD_01917 at 1982.866 kb on - strand, within ECD_01917 at 1982.887 kb on - strand, within ECD_01917 at 1983.019 kb on - strand, within ECD_01917 at 1983.054 kb on - strand, within ECD_01917 at 1983.143 kb on + strand, within ECD_01917 at 1983.236 kb on - strand at 1983.236 kb on - strand at 1983.236 kb on - strand at 1983.262 kb on - strand at 1983.262 kb on - strand at 1983.340 kb on - strand at 1983.404 kb on - strand at 1983.404 kb on - strand at 1983.404 kb on - strand at 1983.435 kb on - strand at 1983.521 kb on - strand at 1983.900 kb on - strand, within ECD_01918 at 1984.067 kb on + strand, within ECD_01918 at 1984.146 kb on - strand, within ECD_01918 at 1984.303 kb on - strand, within ECD_01918 at 1984.396 kb on + strand, within ECD_01918 at 1984.631 kb on + strand, within ECD_01919 at 1984.737 kb on + strand, within ECD_01919 at 1984.738 kb on - strand, within ECD_01919 at 1984.738 kb on - strand, within ECD_01919 at 1984.738 kb on - strand, within ECD_01919 at 1984.740 kb on - strand, within ECD_01919 at 1984.740 kb on - strand, within ECD_01919 at 1984.957 kb on - strand, within ECD_01919 at 1984.957 kb on - strand, within ECD_01919 at 1984.960 kb on - strand, within ECD_01919 at 1984.960 kb on - strand, within ECD_01919 at 1985.151 kb on - strand, within ECD_01919 at 1985.206 kb on - strand, within ECD_01919 at 1985.230 kb on + strand, within ECD_01919 at 1985.231 kb on - strand, within ECD_01919 at 1985.394 kb on + strand at 1985.395 kb on - strand at 1985.395 kb on - strand at 1985.401 kb on - strand at 1985.401 kb on - strand at 1985.403 kb on - strand at 1985.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 1,982,834 - ECD_01917 0.65 -1.3 1,982,866 - ECD_01917 0.68 +0.5 1,982,866 - ECD_01917 0.68 -0.8 1,982,887 - ECD_01917 0.69 +0.3 1,983,019 - ECD_01917 0.79 +0.1 1,983,054 - ECD_01917 0.81 +0.5 1,983,143 + ECD_01917 0.88 -2.5 1,983,236 - -0.1 1,983,236 - -0.2 1,983,236 - -0.2 1,983,262 - +0.6 1,983,262 - -1.1 1,983,340 - -0.5 1,983,404 - +0.5 1,983,404 - +0.2 1,983,404 - -0.1 1,983,435 - -0.4 1,983,521 - -0.2 1,983,900 - ECD_01918 0.35 +0.3 1,984,067 + ECD_01918 0.53 +1.1 1,984,146 - ECD_01918 0.62 +0.5 1,984,303 - ECD_01918 0.78 +0.3 1,984,396 + ECD_01918 0.88 -0.1 1,984,631 + ECD_01919 0.10 +0.3 1,984,737 + ECD_01919 0.23 +0.3 1,984,738 - ECD_01919 0.23 +0.2 1,984,738 - ECD_01919 0.23 -0.5 1,984,738 - ECD_01919 0.23 -1.2 1,984,740 - ECD_01919 0.23 +0.4 1,984,740 - ECD_01919 0.23 +0.7 1,984,957 - ECD_01919 0.50 +0.3 1,984,957 - ECD_01919 0.50 +0.2 1,984,960 - ECD_01919 0.50 -1.2 1,984,960 - ECD_01919 0.50 -0.0 1,985,151 - ECD_01919 0.73 -0.3 1,985,206 - ECD_01919 0.80 +0.7 1,985,230 + ECD_01919 0.83 +0.9 1,985,231 - ECD_01919 0.83 +0.6 1,985,394 + +0.2 1,985,395 - -0.8 1,985,395 - -0.9 1,985,401 - -0.5 1,985,401 - -0.1 1,985,403 - -0.3 1,985,441 - -0.1
Or see this region's nucleotide sequence