Strain Fitness in Escherichia coli BL21 around ECD_01918

Experiment: HSDP3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01917 and ECD_01918 are separated by 266 nucleotidesECD_01918 and ECD_01919 are separated by 45 nucleotidesECD_01919 and ECD_04330 are separated by 129 nucleotides ECD_01917: ECD_01917 - putrescine importer, low affinity, at 1,981,948 to 1,983,306 _01917 ECD_01918: ECD_01918 - LysR family putative transcriptional regulator, at 1,983,573 to 1,984,502 _01918 ECD_01919: ECD_01919 - putative epimerase, at 1,984,548 to 1,985,372 _01919 ECD_04330: ECD_04330 - toxin of the YoeB-YefM toxin-antitoxin system, at 1,985,502 to 1,985,630 _04330 Position (kb) 1983 1984 1985Strain fitness (log2 ratio) -2 -1 0 1at 1982.834 kb on - strand, within ECD_01917at 1982.866 kb on - strand, within ECD_01917at 1982.866 kb on - strand, within ECD_01917at 1982.887 kb on - strand, within ECD_01917at 1983.019 kb on - strand, within ECD_01917at 1983.054 kb on - strand, within ECD_01917at 1983.143 kb on + strand, within ECD_01917at 1983.236 kb on - strandat 1983.236 kb on - strandat 1983.236 kb on - strandat 1983.262 kb on - strandat 1983.262 kb on - strandat 1983.340 kb on - strandat 1983.404 kb on - strandat 1983.404 kb on - strandat 1983.404 kb on - strandat 1983.435 kb on - strandat 1983.521 kb on - strandat 1983.900 kb on - strand, within ECD_01918at 1984.067 kb on + strand, within ECD_01918at 1984.146 kb on - strand, within ECD_01918at 1984.303 kb on - strand, within ECD_01918at 1984.396 kb on + strand, within ECD_01918at 1984.631 kb on + strand, within ECD_01919at 1984.737 kb on + strand, within ECD_01919at 1984.738 kb on - strand, within ECD_01919at 1984.738 kb on - strand, within ECD_01919at 1984.738 kb on - strand, within ECD_01919at 1984.740 kb on - strand, within ECD_01919at 1984.740 kb on - strand, within ECD_01919at 1984.957 kb on - strand, within ECD_01919at 1984.957 kb on - strand, within ECD_01919at 1984.960 kb on - strand, within ECD_01919at 1984.960 kb on - strand, within ECD_01919at 1985.151 kb on - strand, within ECD_01919at 1985.206 kb on - strand, within ECD_01919at 1985.230 kb on + strand, within ECD_01919at 1985.231 kb on - strand, within ECD_01919at 1985.394 kb on + strandat 1985.395 kb on - strandat 1985.395 kb on - strandat 1985.401 kb on - strandat 1985.401 kb on - strandat 1985.403 kb on - strandat 1985.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
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1,982,834 - ECD_01917 0.65 -1.3
1,982,866 - ECD_01917 0.68 +0.5
1,982,866 - ECD_01917 0.68 -0.8
1,982,887 - ECD_01917 0.69 +0.3
1,983,019 - ECD_01917 0.79 +0.1
1,983,054 - ECD_01917 0.81 +0.5
1,983,143 + ECD_01917 0.88 -2.5
1,983,236 - -0.1
1,983,236 - -0.2
1,983,236 - -0.2
1,983,262 - +0.6
1,983,262 - -1.1
1,983,340 - -0.5
1,983,404 - +0.5
1,983,404 - +0.2
1,983,404 - -0.1
1,983,435 - -0.4
1,983,521 - -0.2
1,983,900 - ECD_01918 0.35 +0.3
1,984,067 + ECD_01918 0.53 +1.1
1,984,146 - ECD_01918 0.62 +0.5
1,984,303 - ECD_01918 0.78 +0.3
1,984,396 + ECD_01918 0.88 -0.1
1,984,631 + ECD_01919 0.10 +0.3
1,984,737 + ECD_01919 0.23 +0.3
1,984,738 - ECD_01919 0.23 +0.2
1,984,738 - ECD_01919 0.23 -0.5
1,984,738 - ECD_01919 0.23 -1.2
1,984,740 - ECD_01919 0.23 +0.4
1,984,740 - ECD_01919 0.23 +0.7
1,984,957 - ECD_01919 0.50 +0.3
1,984,957 - ECD_01919 0.50 +0.2
1,984,960 - ECD_01919 0.50 -1.2
1,984,960 - ECD_01919 0.50 -0.0
1,985,151 - ECD_01919 0.73 -0.3
1,985,206 - ECD_01919 0.80 +0.7
1,985,230 + ECD_01919 0.83 +0.9
1,985,231 - ECD_01919 0.83 +0.6
1,985,394 + +0.2
1,985,395 - -0.8
1,985,395 - -0.9
1,985,401 - -0.5
1,985,401 - -0.1
1,985,403 - -0.3
1,985,441 - -0.1

Or see this region's nucleotide sequence