Strain Fitness in Escherichia coli BL21 around ECD_01882

Experiment: HSDP3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01879 and ECD_01880 are separated by 121 nucleotidesECD_01880 and ECD_01881 overlap by 82 nucleotidesECD_01881 and ECD_01882 are separated by 1 nucleotidesECD_01882 and ECD_01883 are separated by 107 nucleotides ECD_01879: ECD_01879 - response regulator in two-component regulatory system with BarA, at 1,939,844 to 1,940,353 _01879 ECD_01880: ECD_01880 - IS1 protein InsA, at 1,940,475 to 1,940,750 _01880 ECD_01881: ECD_01881 - IS1 protein InsB, at 1,940,669 to 1,941,172 _01881 ECD_01882: ECD_01882 - glyoxalase III and Hsp31 molecular chaperone, at 1,941,174 to 1,941,833 _01882 ECD_01883: ECD_01883 - putative sensory kinase in two-component regulatory system with YedW, at 1,941,941 to 1,943,299 _01883 Position (kb) 1941 1942Strain fitness (log2 ratio) -1 0 1 2at 1940.332 kb on + strandat 1940.333 kb on - strandat 1940.346 kb on - strandat 1941.418 kb on + strand, within ECD_01882at 1941.525 kb on - strand, within ECD_01882at 1941.640 kb on + strand, within ECD_01882at 1941.645 kb on + strand, within ECD_01882at 1941.645 kb on + strand, within ECD_01882at 1941.646 kb on - strand, within ECD_01882at 1941.737 kb on + strand, within ECD_01882at 1941.738 kb on - strand, within ECD_01882at 1941.738 kb on - strand, within ECD_01882at 1941.738 kb on - strand, within ECD_01882at 1941.962 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction HSDP3
remove
1,940,332 + -0.2
1,940,333 - -0.5
1,940,346 - +1.7
1,941,418 + ECD_01882 0.37 +1.9
1,941,525 - ECD_01882 0.53 +0.6
1,941,640 + ECD_01882 0.71 -0.1
1,941,645 + ECD_01882 0.71 -0.5
1,941,645 + ECD_01882 0.71 +0.7
1,941,646 - ECD_01882 0.72 +0.9
1,941,737 + ECD_01882 0.85 +0.6
1,941,738 - ECD_01882 0.85 +0.2
1,941,738 - ECD_01882 0.85 +1.3
1,941,738 - ECD_01882 0.85 +0.6
1,941,962 - +0.3

Or see this region's nucleotide sequence