Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01879 and ECD_01880 are separated by 121 nucleotides ECD_01880 and ECD_01881 overlap by 82 nucleotides ECD_01881 and ECD_01882 are separated by 1 nucleotides ECD_01882 and ECD_01883 are separated by 107 nucleotides
ECD_01879: ECD_01879 - response regulator in two-component regulatory system with BarA, at 1,939,844 to 1,940,353
_01879
ECD_01880: ECD_01880 - IS1 protein InsA, at 1,940,475 to 1,940,750
_01880
ECD_01881: ECD_01881 - IS1 protein InsB, at 1,940,669 to 1,941,172
_01881
ECD_01882: ECD_01882 - glyoxalase III and Hsp31 molecular chaperone, at 1,941,174 to 1,941,833
_01882
ECD_01883: ECD_01883 - putative sensory kinase in two-component regulatory system with YedW, at 1,941,941 to 1,943,299
_01883
Position (kb)
1941
1942 Strain fitness (log2 ratio)
-1
0
1
2 at 1940.332 kb on + strand at 1940.333 kb on - strand at 1940.346 kb on - strand at 1941.418 kb on + strand, within ECD_01882 at 1941.525 kb on - strand, within ECD_01882 at 1941.640 kb on + strand, within ECD_01882 at 1941.645 kb on + strand, within ECD_01882 at 1941.645 kb on + strand, within ECD_01882 at 1941.646 kb on - strand, within ECD_01882 at 1941.737 kb on + strand, within ECD_01882 at 1941.738 kb on - strand, within ECD_01882 at 1941.738 kb on - strand, within ECD_01882 at 1941.738 kb on - strand, within ECD_01882 at 1941.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 1,940,332 + -0.2 1,940,333 - -0.5 1,940,346 - +1.7 1,941,418 + ECD_01882 0.37 +1.9 1,941,525 - ECD_01882 0.53 +0.6 1,941,640 + ECD_01882 0.71 -0.1 1,941,645 + ECD_01882 0.71 -0.5 1,941,645 + ECD_01882 0.71 +0.7 1,941,646 - ECD_01882 0.72 +0.9 1,941,737 + ECD_01882 0.85 +0.6 1,941,738 - ECD_01882 0.85 +0.2 1,941,738 - ECD_01882 0.85 +1.3 1,941,738 - ECD_01882 0.85 +0.6 1,941,962 - +0.3
Or see this region's nucleotide sequence