Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01785 and ECD_01786 are separated by 3 nucleotides ECD_01786 and ECD_01787 are separated by 462 nucleotides
ECD_01785: ECD_01785 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, regulator of cellulose production, at 1,844,154 to 1,845,752
_01785
ECD_01786: ECD_01786 - putative membrane protein/conserved protein, at 1,845,756 to 1,847,312
_01786
ECD_01787: ECD_01787 - fused mannose-specific PTS enzymes: IIA component/IIB component, at 1,847,775 to 1,848,746
_01787
Position (kb)
1845
1846
1847
1848 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1844.871 kb on + strand, within ECD_01785 at 1845.024 kb on - strand, within ECD_01785 at 1845.045 kb on - strand, within ECD_01785 at 1845.448 kb on + strand, within ECD_01785 at 1845.449 kb on - strand, within ECD_01785 at 1845.758 kb on - strand at 1845.853 kb on - strand at 1846.099 kb on - strand, within ECD_01786 at 1846.306 kb on - strand, within ECD_01786 at 1846.454 kb on - strand, within ECD_01786 at 1846.608 kb on - strand, within ECD_01786 at 1846.812 kb on - strand, within ECD_01786 at 1847.684 kb on + strand at 1847.760 kb on + strand at 1847.794 kb on + strand at 1847.951 kb on + strand, within ECD_01787 at 1847.975 kb on + strand, within ECD_01787
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 1,844,871 + ECD_01785 0.45 -1.7 1,845,024 - ECD_01785 0.54 -0.1 1,845,045 - ECD_01785 0.56 +0.8 1,845,448 + ECD_01785 0.81 -0.2 1,845,449 - ECD_01785 0.81 +0.4 1,845,758 - -0.1 1,845,853 - +0.6 1,846,099 - ECD_01786 0.22 +0.2 1,846,306 - ECD_01786 0.35 -1.0 1,846,454 - ECD_01786 0.45 -0.8 1,846,608 - ECD_01786 0.55 -3.1 1,846,812 - ECD_01786 0.68 +0.1 1,847,684 + +0.1 1,847,760 + +0.4 1,847,794 + -1.5 1,847,951 + ECD_01787 0.18 -1.2 1,847,975 + ECD_01787 0.21 +0.7
Or see this region's nucleotide sequence