Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01758 and ECD_01759 overlap by 44 nucleotides ECD_01759 and ECD_01760 are separated by 96 nucleotides ECD_01760 and ECD_01761 are separated by 54 nucleotides ECD_01761 and ECD_01762 are separated by 21 nucleotides ECD_01762 and ECD_01763 are separated by 182 nucleotides
ECD_01758: ECD_01758 - UPF0756 family putative inner membrane protein, at 1,818,729 to 1,819,175
_01758
ECD_01759: ECD_01759 - putative DNA-binding transcriptional regulator, at 1,819,132 to 1,819,953
_01759
ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231
_01760
ECD_01761: ECD_01761 - DUF488 family protein, at 1,821,286 to 1,821,633
_01761
ECD_01762: ECD_01762 - DUF333 family outer membrane lipoprotein, at 1,821,655 to 1,821,909
_01762
ECD_01763: ECD_01763 - diguanylate cyclase, at 1,822,092 to 1,823,117
_01763
Position (kb)
1820
1821
1822 Strain fitness (log2 ratio)
-2
-1
0
1 at 1819.190 kb on + strand at 1819.325 kb on - strand, within ECD_01759 at 1819.885 kb on - strand at 1820.004 kb on + strand at 1820.049 kb on + strand at 1820.050 kb on - strand at 1820.050 kb on - strand at 1820.354 kb on - strand, within ECD_01760 at 1820.354 kb on - strand, within ECD_01760 at 1820.361 kb on - strand, within ECD_01760 at 1820.654 kb on + strand, within ECD_01760 at 1820.659 kb on - strand, within ECD_01760 at 1821.118 kb on - strand at 1821.625 kb on - strand at 1822.001 kb on + strand at 1822.034 kb on - strand at 1822.034 kb on - strand at 1822.034 kb on - strand at 1822.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 1,819,190 + -0.8 1,819,325 - ECD_01759 0.23 -1.5 1,819,885 - -2.4 1,820,004 + -0.3 1,820,049 + +0.2 1,820,050 - +0.1 1,820,050 - +0.7 1,820,354 - ECD_01760 0.26 +0.2 1,820,354 - ECD_01760 0.26 -2.1 1,820,361 - ECD_01760 0.26 -1.1 1,820,654 + ECD_01760 0.51 -0.4 1,820,659 - ECD_01760 0.52 -1.2 1,821,118 - -0.3 1,821,625 - -0.7 1,822,001 + -1.6 1,822,034 - -0.8 1,822,034 - +0.8 1,822,034 - +0.3 1,822,051 + -0.2
Or see this region's nucleotide sequence