Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00792 and ECD_00793 are separated by 75 nucleotides ECD_00793 and ECD_00794 overlap by 1 nucleotides ECD_00794 and ECD_00795 are separated by 203 nucleotides
ECD_00792: ECD_00792 - fructose-6-phosphate aldolase 1, at 847,561 to 848,223
_00792
ECD_00793: ECD_00793 - molybdopterin synthase sulfurylase, at 848,299 to 849,048
_00793
ECD_00794: ECD_00794 - molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein, at 849,048 to 850,283
_00794
ECD_00795: ECD_00795 - Isoaspartyl peptidase, at 850,487 to 851,452
_00795
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1 at 848.091 kb on - strand, within ECD_00792 at 848.145 kb on + strand, within ECD_00792 at 848.279 kb on - strand at 848.372 kb on + strand at 848.373 kb on - strand at 848.453 kb on - strand, within ECD_00793 at 848.453 kb on - strand, within ECD_00793 at 848.648 kb on - strand, within ECD_00793 at 848.648 kb on - strand, within ECD_00793 at 849.082 kb on - strand at 849.082 kb on - strand at 849.152 kb on + strand at 849.166 kb on - strand at 849.166 kb on - strand at 849.166 kb on - strand at 849.166 kb on - strand at 849.166 kb on - strand at 849.167 kb on + strand at 849.167 kb on + strand at 849.168 kb on - strand at 849.168 kb on - strand at 849.327 kb on + strand, within ECD_00794 at 849.349 kb on - strand, within ECD_00794 at 849.358 kb on + strand, within ECD_00794 at 849.359 kb on - strand, within ECD_00794 at 849.411 kb on - strand, within ECD_00794 at 849.658 kb on - strand, within ECD_00794 at 849.755 kb on + strand, within ECD_00794 at 850.186 kb on - strand at 850.323 kb on - strand at 850.404 kb on - strand at 850.404 kb on - strand at 850.443 kb on + strand at 850.447 kb on + strand at 850.483 kb on + strand at 850.483 kb on + strand at 850.486 kb on + strand at 850.563 kb on + strand at 850.563 kb on + strand at 850.635 kb on + strand, within ECD_00795 at 850.753 kb on + strand, within ECD_00795 at 850.944 kb on + strand, within ECD_00795 at 850.985 kb on - strand, within ECD_00795 at 851.093 kb on - strand, within ECD_00795 at 851.213 kb on + strand, within ECD_00795 at 851.277 kb on + strand, within ECD_00795
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 848,091 - ECD_00792 0.80 +0.2 848,145 + ECD_00792 0.88 +0.5 848,279 - +1.0 848,372 + -0.0 848,373 - +0.2 848,453 - ECD_00793 0.21 +0.0 848,453 - ECD_00793 0.21 -1.3 848,648 - ECD_00793 0.47 -0.5 848,648 - ECD_00793 0.47 +0.3 849,082 - -0.0 849,082 - -0.9 849,152 + -1.1 849,166 - +0.7 849,166 - -0.2 849,166 - -0.0 849,166 - -0.4 849,166 - +0.3 849,167 + -1.0 849,167 + +1.0 849,168 - +0.5 849,168 - -0.0 849,327 + ECD_00794 0.23 +0.1 849,349 - ECD_00794 0.24 +0.1 849,358 + ECD_00794 0.25 -0.9 849,359 - ECD_00794 0.25 -0.6 849,411 - ECD_00794 0.29 -2.0 849,658 - ECD_00794 0.49 +0.6 849,755 + ECD_00794 0.57 -1.0 850,186 - -0.3 850,323 - -0.6 850,404 - +0.1 850,404 - +0.5 850,443 + +0.2 850,447 + +0.5 850,483 + -2.2 850,483 + -1.1 850,486 + -0.7 850,563 + -0.1 850,563 + -0.6 850,635 + ECD_00795 0.15 +0.4 850,753 + ECD_00795 0.28 -0.2 850,944 + ECD_00795 0.47 +1.5 850,985 - ECD_00795 0.52 +0.5 851,093 - ECD_00795 0.63 -1.3 851,213 + ECD_00795 0.75 +0.3 851,277 + ECD_00795 0.82 +0.4
Or see this region's nucleotide sequence