Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00621 and ECD_00622 overlap by 1 nucleotides ECD_00622 and ECD_00623 are separated by 169 nucleotides
ECD_00621: ECD_00621 - glutamate/aspartate ABC transporter permease, at 644,266 to 644,940
_00621
ECD_00622: ECD_00622 - glutamate/aspartate ABC transporter permease, at 644,940 to 645,680
_00622
ECD_00623: ECD_00623 - glutamate/aspartate periplasmic binding protein, at 645,850 to 646,758
_00623
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1 at 644.267 kb on + strand at 644.417 kb on - strand, within ECD_00621 at 644.423 kb on + strand, within ECD_00621 at 644.423 kb on + strand, within ECD_00621 at 644.423 kb on + strand, within ECD_00621 at 644.423 kb on + strand, within ECD_00621 at 644.424 kb on - strand, within ECD_00621 at 644.424 kb on - strand, within ECD_00621 at 644.607 kb on - strand, within ECD_00621 at 644.734 kb on - strand, within ECD_00621 at 644.755 kb on + strand, within ECD_00621 at 644.941 kb on + strand at 644.975 kb on + strand at 644.976 kb on - strand at 645.005 kb on + strand at 645.025 kb on + strand, within ECD_00622 at 645.025 kb on + strand, within ECD_00622 at 645.025 kb on + strand, within ECD_00622 at 645.025 kb on + strand, within ECD_00622 at 645.026 kb on - strand, within ECD_00622 at 645.208 kb on + strand, within ECD_00622 at 645.428 kb on - strand, within ECD_00622 at 645.479 kb on - strand, within ECD_00622 at 645.479 kb on - strand, within ECD_00622 at 645.522 kb on + strand, within ECD_00622 at 645.619 kb on + strand at 645.620 kb on - strand at 645.672 kb on + strand at 645.672 kb on + strand at 645.672 kb on + strand at 645.675 kb on - strand at 645.681 kb on - strand at 645.714 kb on + strand at 645.747 kb on - strand at 645.788 kb on - strand at 645.790 kb on - strand at 645.807 kb on + strand at 645.957 kb on + strand, within ECD_00623 at 646.041 kb on + strand, within ECD_00623 at 646.042 kb on - strand, within ECD_00623 at 646.050 kb on + strand, within ECD_00623 at 646.051 kb on - strand, within ECD_00623 at 646.051 kb on - strand, within ECD_00623 at 646.565 kb on + strand, within ECD_00623 at 646.592 kb on + strand, within ECD_00623 at 646.593 kb on - strand, within ECD_00623 at 646.666 kb on - strand, within ECD_00623
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 644,267 + +0.9 644,417 - ECD_00621 0.22 -0.1 644,423 + ECD_00621 0.23 -0.7 644,423 + ECD_00621 0.23 +0.4 644,423 + ECD_00621 0.23 +0.2 644,423 + ECD_00621 0.23 +1.0 644,424 - ECD_00621 0.23 -0.5 644,424 - ECD_00621 0.23 -0.7 644,607 - ECD_00621 0.51 +0.2 644,734 - ECD_00621 0.69 -0.9 644,755 + ECD_00621 0.72 +0.3 644,941 + -0.7 644,975 + -0.4 644,976 - +0.4 645,005 + +0.1 645,025 + ECD_00622 0.11 +0.8 645,025 + ECD_00622 0.11 +0.2 645,025 + ECD_00622 0.11 +0.7 645,025 + ECD_00622 0.11 -0.1 645,026 - ECD_00622 0.12 +0.5 645,208 + ECD_00622 0.36 +1.4 645,428 - ECD_00622 0.66 +0.7 645,479 - ECD_00622 0.73 +0.5 645,479 - ECD_00622 0.73 -0.2 645,522 + ECD_00622 0.79 +0.7 645,619 + -0.3 645,620 - +0.1 645,672 + +0.3 645,672 + -0.2 645,672 + +0.6 645,675 - -0.0 645,681 - +0.8 645,714 + -0.3 645,747 - -0.3 645,788 - +0.2 645,790 - -0.2 645,807 + -1.9 645,957 + ECD_00623 0.12 +0.6 646,041 + ECD_00623 0.21 +0.5 646,042 - ECD_00623 0.21 +0.5 646,050 + ECD_00623 0.22 +0.7 646,051 - ECD_00623 0.22 +0.3 646,051 - ECD_00623 0.22 +1.4 646,565 + ECD_00623 0.79 +1.5 646,592 + ECD_00623 0.82 +1.5 646,593 - ECD_00623 0.82 +0.4 646,666 - ECD_00623 0.90 +0.4
Or see this region's nucleotide sequence