Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00554 and ECD_00555 overlap by 4 nucleotides ECD_00555 and ECD_00556 overlap by 4 nucleotides ECD_00556 and ECD_00557 overlap by 4 nucleotides
ECD_00554: ECD_00554 - regulator of length of O-antigen component of lipopolysaccharide chains, at 578,741 to 579,874
_00554
ECD_00555: ECD_00555 - ferrienterobactin ABC transporter ATPase, at 579,871 to 580,686
_00555
ECD_00556: ECD_00556 - iron-enterobactin ABC transporter permease, at 580,683 to 581,675
_00556
ECD_00557: ECD_00557 - ferrienterobactin ABC transporter permease, at 581,672 to 582,676
_00557
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1 at 579.761 kb on - strand at 579.867 kb on + strand at 579.868 kb on - strand at 580.075 kb on - strand, within ECD_00555 at 580.101 kb on + strand, within ECD_00555 at 580.195 kb on - strand, within ECD_00555 at 580.598 kb on - strand, within ECD_00555 at 581.074 kb on - strand, within ECD_00556 at 581.075 kb on + strand, within ECD_00556 at 581.076 kb on - strand, within ECD_00556 at 581.076 kb on - strand, within ECD_00556 at 581.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 579,761 - -0.5 579,867 + -0.8 579,868 - +0.4 580,075 - ECD_00555 0.25 +1.0 580,101 + ECD_00555 0.28 -0.3 580,195 - ECD_00555 0.40 -0.2 580,598 - ECD_00555 0.89 +0.3 581,074 - ECD_00556 0.39 -1.8 581,075 + ECD_00556 0.39 +0.0 581,076 - ECD_00556 0.40 -0.7 581,076 - ECD_00556 0.40 -0.4 581,595 + +0.5
Or see this region's nucleotide sequence