Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00226 and ECD_00227 are separated by 51 nucleotides ECD_00227 and ECD_00228 are separated by 2 nucleotides ECD_00228 and ECD_00229 are separated by 9 nucleotides ECD_00229 and ECD_00230 are separated by 233 nucleotides ECD_00230 and ECD_00231 overlap by 32 nucleotides
ECD_00226: ECD_00226 - DNA polymerase IV, at 255,464 to 256,519
_00226
ECD_00227: ECD_00227 - antitoxin of the YafO-YafN toxin-antitoxin system, at 256,571 to 256,864
_00227
ECD_00228: ECD_00228 - mRNA interferase toxin of the YafO-YafN toxin-antitoxin system, at 256,867 to 257,265
_00228
ECD_00229: ECD_00229 - GNAT family putative N-acetyltransferase, at 257,275 to 257,727
_00229
ECD_00230: ECD_00230 - hypothetical protein, at 257,961 to 258,227
_00230
ECD_00231: ECD_00231 - peptide chain release factor 2, at 258,196 to 258,696
_00231
Position (kb) 257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 256.306 kb on - strand, within ECD_00226 at 256.530 kb on + strand at 256.976 kb on + strand, within ECD_00228 at 256.977 kb on - strand, within ECD_00228 at 256.977 kb on - strand, within ECD_00228 at 257.127 kb on - strand, within ECD_00228 at 257.129 kb on - strand, within ECD_00228 at 257.516 kb on + strand, within ECD_00229 at 257.958 kb on + strand at 257.970 kb on + strand at 258.061 kb on + strand, within ECD_00230 at 258.062 kb on - strand, within ECD_00230 at 258.279 kb on - strand, within ECD_00231 at 258.301 kb on - strand, within ECD_00231 at 258.375 kb on + strand, within ECD_00231 at 258.456 kb on + strand, within ECD_00231 at 258.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 256,306 - ECD_00226 0.80 +0.0 256,530 + +0.2 256,976 + ECD_00228 0.27 -0.7 256,977 - ECD_00228 0.28 +0.7 256,977 - ECD_00228 0.28 +0.1 257,127 - ECD_00228 0.65 -0.9 257,129 - ECD_00228 0.66 -0.1 257,516 + ECD_00229 0.53 +0.2 257,958 + +0.1 257,970 + +0.2 258,061 + ECD_00230 0.37 +0.6 258,062 - ECD_00230 0.38 +0.7 258,279 - ECD_00231 0.17 -0.2 258,301 - ECD_00231 0.21 -3.1 258,375 + ECD_00231 0.36 -0.7 258,456 + ECD_00231 0.52 +0.2 258,685 - -0.8
Or see this region's nucleotide sequence