Experiment: HSDP3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00131 and ECD_00132 are separated by 73 nucleotides ECD_00132 and ECD_00133 are separated by 11 nucleotides ECD_00133 and ECD_00134 are separated by 112 nucleotides
ECD_00131: ECD_00131 - transposase_31 family protein, at 149,772 to 150,674
_00131
ECD_00132: ECD_00132 - pantothenate synthetase, at 150,748 to 151,599
_00132
ECD_00133: ECD_00133 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 151,611 to 152,405
_00133
ECD_00134: ECD_00134 - putative fimbrial-like adhesin protein, at 152,518 to 153,864
_00134
Position (kb) 150
151
152 Strain fitness (log2 ratio) -1
0
1 at 149.857 kb on + strand at 150.065 kb on + strand, within ECD_00131 at 150.065 kb on + strand, within ECD_00131 at 150.066 kb on - strand, within ECD_00131 at 150.189 kb on + strand, within ECD_00131 at 150.218 kb on + strand, within ECD_00131 at 150.219 kb on - strand, within ECD_00131 at 150.219 kb on - strand, within ECD_00131 at 150.331 kb on + strand, within ECD_00131 at 150.332 kb on - strand, within ECD_00131 at 150.332 kb on - strand, within ECD_00131 at 150.332 kb on - strand, within ECD_00131 at 150.376 kb on - strand, within ECD_00131 at 150.376 kb on - strand, within ECD_00131 at 150.411 kb on + strand, within ECD_00131 at 150.412 kb on - strand, within ECD_00131 at 150.413 kb on + strand, within ECD_00131 at 150.432 kb on - strand, within ECD_00131 at 150.453 kb on + strand, within ECD_00131 at 150.562 kb on + strand, within ECD_00131 at 150.562 kb on + strand, within ECD_00131 at 150.562 kb on + strand, within ECD_00131 at 150.562 kb on + strand, within ECD_00131 at 150.563 kb on - strand, within ECD_00131 at 150.662 kb on + strand at 150.663 kb on - strand at 150.686 kb on + strand at 150.746 kb on + strand at 150.924 kb on + strand, within ECD_00132 at 150.986 kb on + strand, within ECD_00132 at 151.069 kb on - strand, within ECD_00132 at 151.104 kb on + strand, within ECD_00132 at 151.277 kb on + strand, within ECD_00132 at 151.277 kb on + strand, within ECD_00132 at 151.277 kb on + strand, within ECD_00132 at 151.277 kb on + strand, within ECD_00132 at 151.277 kb on + strand, within ECD_00132 at 151.278 kb on - strand, within ECD_00132 at 151.278 kb on - strand, within ECD_00132 at 151.489 kb on - strand, within ECD_00132 at 151.594 kb on + strand at 151.664 kb on + strand at 151.666 kb on + strand at 151.666 kb on + strand at 151.666 kb on + strand at 151.667 kb on - strand at 151.667 kb on - strand at 151.667 kb on - strand at 151.724 kb on + strand, within ECD_00133 at 151.835 kb on + strand, within ECD_00133 at 151.897 kb on - strand, within ECD_00133 at 151.902 kb on + strand, within ECD_00133 at 151.903 kb on - strand, within ECD_00133 at 151.951 kb on - strand, within ECD_00133 at 151.958 kb on - strand, within ECD_00133 at 151.996 kb on - strand, within ECD_00133 at 151.996 kb on - strand, within ECD_00133 at 152.047 kb on - strand, within ECD_00133 at 152.138 kb on - strand, within ECD_00133 at 152.190 kb on + strand, within ECD_00133 at 152.191 kb on - strand, within ECD_00133 at 152.191 kb on - strand, within ECD_00133 at 152.191 kb on - strand, within ECD_00133 at 152.292 kb on - strand, within ECD_00133 at 152.325 kb on - strand, within ECD_00133 at 152.361 kb on - strand at 152.369 kb on + strand at 152.445 kb on + strand at 152.475 kb on - strand at 152.481 kb on + strand at 152.516 kb on + strand at 152.516 kb on + strand at 152.517 kb on - strand at 152.569 kb on + strand at 152.570 kb on - strand at 152.577 kb on + strand at 152.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HSDP3 remove 149,857 + -0.5 150,065 + ECD_00131 0.32 +0.8 150,065 + ECD_00131 0.32 -0.5 150,066 - ECD_00131 0.33 +0.2 150,189 + ECD_00131 0.46 -1.6 150,218 + ECD_00131 0.49 -0.1 150,219 - ECD_00131 0.50 +0.2 150,219 - ECD_00131 0.50 +1.2 150,331 + ECD_00131 0.62 +0.2 150,332 - ECD_00131 0.62 +0.2 150,332 - ECD_00131 0.62 +0.3 150,332 - ECD_00131 0.62 +0.9 150,376 - ECD_00131 0.67 +0.3 150,376 - ECD_00131 0.67 -0.4 150,411 + ECD_00131 0.71 +0.4 150,412 - ECD_00131 0.71 +0.3 150,413 + ECD_00131 0.71 -0.0 150,432 - ECD_00131 0.73 +0.6 150,453 + ECD_00131 0.75 -1.0 150,562 + ECD_00131 0.87 -1.3 150,562 + ECD_00131 0.87 -0.9 150,562 + ECD_00131 0.87 -0.3 150,562 + ECD_00131 0.87 +0.4 150,563 - ECD_00131 0.88 -1.6 150,662 + +0.6 150,663 - -0.6 150,686 + +1.2 150,746 + -0.1 150,924 + ECD_00132 0.21 -0.1 150,986 + ECD_00132 0.28 -0.2 151,069 - ECD_00132 0.38 -1.3 151,104 + ECD_00132 0.42 -1.3 151,277 + ECD_00132 0.62 -0.5 151,277 + ECD_00132 0.62 -0.2 151,277 + ECD_00132 0.62 -0.9 151,277 + ECD_00132 0.62 -0.8 151,277 + ECD_00132 0.62 +0.5 151,278 - ECD_00132 0.62 +1.1 151,278 - ECD_00132 0.62 -1.2 151,489 - ECD_00132 0.87 +0.7 151,594 + -0.3 151,664 + +1.0 151,666 + +0.3 151,666 + -0.6 151,666 + +0.6 151,667 - +0.0 151,667 - +0.2 151,667 - -0.3 151,724 + ECD_00133 0.14 +0.1 151,835 + ECD_00133 0.28 +0.4 151,897 - ECD_00133 0.36 -0.8 151,902 + ECD_00133 0.37 -0.0 151,903 - ECD_00133 0.37 +0.4 151,951 - ECD_00133 0.43 +0.7 151,958 - ECD_00133 0.44 +0.4 151,996 - ECD_00133 0.48 +0.3 151,996 - ECD_00133 0.48 -0.5 152,047 - ECD_00133 0.55 +0.4 152,138 - ECD_00133 0.66 +0.1 152,190 + ECD_00133 0.73 +0.4 152,191 - ECD_00133 0.73 -0.5 152,191 - ECD_00133 0.73 +0.5 152,191 - ECD_00133 0.73 +0.0 152,292 - ECD_00133 0.86 +1.1 152,325 - ECD_00133 0.90 +1.7 152,361 - +0.0 152,369 + +0.0 152,445 + +0.1 152,475 - +0.6 152,481 + -0.6 152,516 + -0.3 152,516 + -0.2 152,517 - -0.4 152,569 + -1.0 152,570 - -0.4 152,577 + +0.5 152,594 - +0.5
Or see this region's nucleotide sequence