Strain Fitness in Escherichia coli BL21 around ECD_02309

Experiment: CBA120

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02308 and ECD_02309 are separated by 89 nucleotidesECD_02309 and ECD_02310 overlap by 4 nucleotidesECD_02310 and ECD_02311 are separated by 1 nucleotides ECD_02308: ECD_02308 - transcriptional regulator of yefH, at 2,398,317 to 2,399,243 _02308 ECD_02309: ECD_02309 - putative inorganic ion transporter, at 2,399,333 to 2,400,331 _02309 ECD_02310: ECD_02310 - DUF3820 family protein, at 2,400,328 to 2,400,546 _02310 ECD_02311: ECD_02311 - DNA ligase, NAD(+)-dependent, at 2,400,548 to 2,402,563 _02311 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -2 -1 0 1at 2398.473 kb on + strand, within ECD_02308at 2398.523 kb on + strand, within ECD_02308at 2398.699 kb on + strand, within ECD_02308at 2398.700 kb on - strand, within ECD_02308at 2398.700 kb on - strand, within ECD_02308at 2398.700 kb on - strand, within ECD_02308at 2398.880 kb on + strand, within ECD_02308at 2398.881 kb on - strand, within ECD_02308at 2399.306 kb on + strandat 2399.473 kb on + strand, within ECD_02309at 2399.643 kb on - strand, within ECD_02309at 2399.957 kb on + strand, within ECD_02309at 2399.959 kb on + strand, within ECD_02309at 2400.067 kb on - strand, within ECD_02309at 2400.071 kb on - strand, within ECD_02309at 2400.294 kb on + strandat 2400.401 kb on - strand, within ECD_02310at 2400.456 kb on - strand, within ECD_02310

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Per-strain Table

Position Strand Gene LocusTag Fraction CBA120
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2,398,473 + ECD_02308 0.17 +0.9
2,398,523 + ECD_02308 0.22 -1.3
2,398,699 + ECD_02308 0.41 +0.2
2,398,700 - ECD_02308 0.41 +0.3
2,398,700 - ECD_02308 0.41 -2.0
2,398,700 - ECD_02308 0.41 +1.4
2,398,880 + ECD_02308 0.61 -0.4
2,398,881 - ECD_02308 0.61 +0.7
2,399,306 + +0.5
2,399,473 + ECD_02309 0.14 -0.9
2,399,643 - ECD_02309 0.31 -1.7
2,399,957 + ECD_02309 0.62 -0.0
2,399,959 + ECD_02309 0.63 -0.5
2,400,067 - ECD_02309 0.73 -1.4
2,400,071 - ECD_02309 0.74 +0.4
2,400,294 + +0.2
2,400,401 - ECD_02310 0.33 +1.0
2,400,456 - ECD_02310 0.58 -0.4

Or see this region's nucleotide sequence