Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04051 and ECD_04052 are separated by 9 nucleotides ECD_04052 and ECD_04053 are separated by 2 nucleotides ECD_04053 and ECD_04054 are separated by 83 nucleotides
ECD_04051: ECD_04051 - UPF0719 family inner membrane protein, at 4,318,499 to 4,318,897
_04051
ECD_04052: ECD_04052 - DUF1190 family protein, at 4,318,907 to 4,319,545
_04052
ECD_04053: ECD_04053 - ATP-Grasp family ATPase, at 4,319,548 to 4,320,711
_04053
ECD_04054: ECD_04054 - DNA alkylation damage repair protein; flavin-containing DNA binding protein, weak isovaleryl CoA dehydrogenase, at 4,320,795 to 4,322,420
_04054
Position (kb)
4319
4320
4321 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4318.671 kb on - strand, within ECD_04051 at 4318.786 kb on + strand, within ECD_04051 at 4318.885 kb on + strand at 4318.933 kb on + strand at 4318.939 kb on + strand at 4319.083 kb on + strand, within ECD_04052 at 4319.221 kb on + strand, within ECD_04052 at 4319.221 kb on + strand, within ECD_04052 at 4319.221 kb on + strand, within ECD_04052 at 4319.245 kb on + strand, within ECD_04052 at 4319.245 kb on + strand, within ECD_04052 at 4319.246 kb on - strand, within ECD_04052 at 4319.264 kb on + strand, within ECD_04052 at 4319.355 kb on - strand, within ECD_04052 at 4319.415 kb on - strand, within ECD_04052 at 4319.450 kb on + strand, within ECD_04052 at 4319.620 kb on - strand at 4319.620 kb on - strand at 4319.638 kb on + strand at 4319.924 kb on - strand, within ECD_04053 at 4319.979 kb on + strand, within ECD_04053 at 4319.980 kb on - strand, within ECD_04053 at 4320.009 kb on + strand, within ECD_04053 at 4320.046 kb on + strand, within ECD_04053 at 4320.047 kb on - strand, within ECD_04053 at 4320.102 kb on + strand, within ECD_04053 at 4320.112 kb on + strand, within ECD_04053 at 4320.112 kb on + strand, within ECD_04053 at 4320.112 kb on + strand, within ECD_04053 at 4320.113 kb on - strand, within ECD_04053 at 4320.156 kb on + strand, within ECD_04053 at 4320.156 kb on + strand, within ECD_04053 at 4320.157 kb on - strand, within ECD_04053 at 4320.214 kb on - strand, within ECD_04053 at 4320.234 kb on + strand, within ECD_04053 at 4320.234 kb on + strand, within ECD_04053 at 4320.235 kb on - strand, within ECD_04053 at 4320.235 kb on - strand, within ECD_04053 at 4320.235 kb on - strand, within ECD_04053 at 4320.235 kb on - strand, within ECD_04053 at 4320.327 kb on + strand, within ECD_04053 at 4320.327 kb on + strand, within ECD_04053 at 4320.336 kb on + strand, within ECD_04053 at 4320.340 kb on - strand, within ECD_04053 at 4320.384 kb on + strand, within ECD_04053 at 4320.385 kb on - strand, within ECD_04053 at 4320.442 kb on + strand, within ECD_04053 at 4320.443 kb on - strand, within ECD_04053 at 4320.450 kb on + strand, within ECD_04053 at 4320.504 kb on + strand, within ECD_04053 at 4320.532 kb on + strand, within ECD_04053 at 4320.553 kb on + strand, within ECD_04053 at 4320.592 kb on + strand, within ECD_04053 at 4320.592 kb on + strand, within ECD_04053 at 4320.593 kb on - strand, within ECD_04053 at 4320.655 kb on - strand at 4320.655 kb on - strand at 4320.697 kb on + strand at 4320.720 kb on + strand at 4320.760 kb on - strand at 4320.760 kb on - strand at 4320.762 kb on + strand at 4320.763 kb on - strand at 4320.763 kb on - strand at 4320.830 kb on + strand at 4320.831 kb on - strand at 4320.831 kb on - strand at 4320.854 kb on - strand at 4321.000 kb on + strand, within ECD_04054 at 4321.009 kb on - strand, within ECD_04054 at 4321.078 kb on + strand, within ECD_04054 at 4321.079 kb on - strand, within ECD_04054 at 4321.079 kb on - strand, within ECD_04054 at 4321.079 kb on - strand, within ECD_04054 at 4321.158 kb on - strand, within ECD_04054 at 4321.158 kb on - strand, within ECD_04054 at 4321.162 kb on + strand, within ECD_04054 at 4321.162 kb on + strand, within ECD_04054 at 4321.163 kb on - strand, within ECD_04054 at 4321.190 kb on - strand, within ECD_04054 at 4321.190 kb on - strand, within ECD_04054 at 4321.190 kb on - strand, within ECD_04054 at 4321.373 kb on + strand, within ECD_04054
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 4,318,671 - ECD_04051 0.43 -1.1 4,318,786 + ECD_04051 0.72 -1.3 4,318,885 + -0.6 4,318,933 + +0.5 4,318,939 + -0.1 4,319,083 + ECD_04052 0.28 -0.1 4,319,221 + ECD_04052 0.49 +1.1 4,319,221 + ECD_04052 0.49 -0.3 4,319,221 + ECD_04052 0.49 -0.5 4,319,245 + ECD_04052 0.53 -0.2 4,319,245 + ECD_04052 0.53 -0.6 4,319,246 - ECD_04052 0.53 -3.8 4,319,264 + ECD_04052 0.56 -0.1 4,319,355 - ECD_04052 0.70 +0.5 4,319,415 - ECD_04052 0.79 +1.4 4,319,450 + ECD_04052 0.85 +0.4 4,319,620 - -0.1 4,319,620 - -0.7 4,319,638 + -0.1 4,319,924 - ECD_04053 0.32 +0.4 4,319,979 + ECD_04053 0.37 +0.3 4,319,980 - ECD_04053 0.37 +0.1 4,320,009 + ECD_04053 0.40 -0.1 4,320,046 + ECD_04053 0.43 -0.1 4,320,047 - ECD_04053 0.43 -1.0 4,320,102 + ECD_04053 0.48 -0.7 4,320,112 + ECD_04053 0.48 -0.4 4,320,112 + ECD_04053 0.48 +0.0 4,320,112 + ECD_04053 0.48 +0.1 4,320,113 - ECD_04053 0.49 -0.7 4,320,156 + ECD_04053 0.52 -1.8 4,320,156 + ECD_04053 0.52 -0.0 4,320,157 - ECD_04053 0.52 -0.0 4,320,214 - ECD_04053 0.57 -0.2 4,320,234 + ECD_04053 0.59 +0.7 4,320,234 + ECD_04053 0.59 +0.2 4,320,235 - ECD_04053 0.59 +1.0 4,320,235 - ECD_04053 0.59 -0.9 4,320,235 - ECD_04053 0.59 +0.6 4,320,235 - ECD_04053 0.59 -0.2 4,320,327 + ECD_04053 0.67 +0.3 4,320,327 + ECD_04053 0.67 +0.5 4,320,336 + ECD_04053 0.68 +0.4 4,320,340 - ECD_04053 0.68 -1.0 4,320,384 + ECD_04053 0.72 +0.2 4,320,385 - ECD_04053 0.72 +0.3 4,320,442 + ECD_04053 0.77 +0.8 4,320,443 - ECD_04053 0.77 +0.4 4,320,450 + ECD_04053 0.77 -0.7 4,320,504 + ECD_04053 0.82 +0.6 4,320,532 + ECD_04053 0.85 +0.5 4,320,553 + ECD_04053 0.86 +0.2 4,320,592 + ECD_04053 0.90 -0.6 4,320,592 + ECD_04053 0.90 -0.4 4,320,593 - ECD_04053 0.90 +0.8 4,320,655 - +1.0 4,320,655 - +0.2 4,320,697 + -0.0 4,320,720 + +0.0 4,320,760 - -0.3 4,320,760 - +0.0 4,320,762 + +0.1 4,320,763 - -0.0 4,320,763 - +0.4 4,320,830 + +0.6 4,320,831 - +0.2 4,320,831 - +1.1 4,320,854 - -0.7 4,321,000 + ECD_04054 0.13 +0.1 4,321,009 - ECD_04054 0.13 +0.2 4,321,078 + ECD_04054 0.17 +0.3 4,321,079 - ECD_04054 0.17 +0.2 4,321,079 - ECD_04054 0.17 +1.3 4,321,079 - ECD_04054 0.17 +0.0 4,321,158 - ECD_04054 0.22 +0.0 4,321,158 - ECD_04054 0.22 -0.9 4,321,162 + ECD_04054 0.23 +0.2 4,321,162 + ECD_04054 0.23 +1.0 4,321,163 - ECD_04054 0.23 +0.2 4,321,190 - ECD_04054 0.24 -0.3 4,321,190 - ECD_04054 0.24 -0.3 4,321,190 - ECD_04054 0.24 +0.5 4,321,373 + ECD_04054 0.36 +0.1
Or see this region's nucleotide sequence