Strain Fitness in Escherichia coli BL21 around ECD_03774

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03773 and ECD_03774 are separated by 852 nucleotidesECD_03774 and ECD_03775 are separated by 241 nucleotidesECD_03775 and ECD_03776 are separated by 329 nucleotides ECD_03773: ECD_03773 - GNAT family putative N-acetyltransferase, at 3,984,036 to 3,985,025 _03773 ECD_03774: ECD_03774 - CopG family putative transcriptional regulator, at 3,985,878 to 3,986,096 _03774 ECD_03775: ECD_03775 - putative thymol sensitivity protein, CopG family putative transcriptional regulator, at 3,986,338 to 3,986,556 _03775 ECD_03776: ECD_03776 - formate dehydrogenase formation protein, at 3,986,886 to 3,987,815 _03776 Position (kb) 3985 3986 3987Strain fitness (log2 ratio) -1 0 1at 3984.963 kb on + strandat 3984.963 kb on + strandat 3984.963 kb on + strandat 3984.963 kb on + strandat 3984.964 kb on - strandat 3984.965 kb on + strandat 3984.997 kb on - strandat 3985.024 kb on - strandat 3985.024 kb on - strandat 3985.069 kb on - strandat 3985.069 kb on - strandat 3985.391 kb on - strandat 3985.844 kb on + strandat 3985.859 kb on + strandat 3985.995 kb on + strand, within ECD_03774at 3986.025 kb on - strand, within ECD_03774at 3986.146 kb on - strandat 3986.151 kb on + strandat 3986.192 kb on + strandat 3986.283 kb on + strandat 3986.313 kb on + strandat 3986.313 kb on + strandat 3986.314 kb on - strandat 3986.331 kb on + strandat 3986.333 kb on + strandat 3986.333 kb on + strandat 3986.333 kb on + strandat 3986.338 kb on - strandat 3986.377 kb on - strand, within ECD_03775at 3986.426 kb on + strand, within ECD_03775at 3986.426 kb on + strand, within ECD_03775at 3986.426 kb on + strand, within ECD_03775at 3986.426 kb on + strand, within ECD_03775at 3986.426 kb on + strand, within ECD_03775at 3986.427 kb on - strand, within ECD_03775at 3986.427 kb on - strand, within ECD_03775at 3986.427 kb on - strand, within ECD_03775at 3986.427 kb on - strand, within ECD_03775at 3986.427 kb on - strand, within ECD_03775at 3986.535 kb on + strandat 3986.554 kb on + strandat 3986.743 kb on - strandat 3986.761 kb on - strandat 3986.791 kb on - strandat 3986.888 kb on - strandat 3987.019 kb on + strand, within ECD_03776at 3987.035 kb on - strand, within ECD_03776at 3987.065 kb on + strand, within ECD_03776

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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3,984,963 + -1.2
3,984,963 + -0.0
3,984,963 + +0.3
3,984,963 + +0.2
3,984,964 - +0.5
3,984,965 + -0.7
3,984,997 - -0.1
3,985,024 - +0.6
3,985,024 - -0.3
3,985,069 - +0.8
3,985,069 - +0.2
3,985,391 - +0.1
3,985,844 + +0.2
3,985,859 + +0.5
3,985,995 + ECD_03774 0.53 -0.7
3,986,025 - ECD_03774 0.67 -0.4
3,986,146 - -0.7
3,986,151 + +0.5
3,986,192 + -0.2
3,986,283 + -0.4
3,986,313 + +0.3
3,986,313 + -0.5
3,986,314 - +0.2
3,986,331 + +0.9
3,986,333 + -0.0
3,986,333 + -0.1
3,986,333 + -0.4
3,986,338 - -0.0
3,986,377 - ECD_03775 0.18 -0.1
3,986,426 + ECD_03775 0.40 -0.3
3,986,426 + ECD_03775 0.40 -0.2
3,986,426 + ECD_03775 0.40 -0.2
3,986,426 + ECD_03775 0.40 +0.0
3,986,426 + ECD_03775 0.40 +0.2
3,986,427 - ECD_03775 0.41 +0.3
3,986,427 - ECD_03775 0.41 -0.6
3,986,427 - ECD_03775 0.41 -1.5
3,986,427 - ECD_03775 0.41 -0.3
3,986,427 - ECD_03775 0.41 -0.9
3,986,535 + +0.9
3,986,554 + +0.6
3,986,743 - +0.0
3,986,761 - -0.2
3,986,791 - -0.1
3,986,888 - +0.3
3,987,019 + ECD_03776 0.14 +0.2
3,987,035 - ECD_03776 0.16 +0.3
3,987,065 + ECD_03776 0.19 +0.7

Or see this region's nucleotide sequence