Strain Fitness in Escherichia coli BL21 around ECD_03547

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03546 and ECD_03547 are separated by 45 nucleotidesECD_03547 and ECD_03548 are separated by 52 nucleotides ECD_03546: ECD_03546 - putative transporter, at 3,728,916 to 3,730,271 _03546 ECD_03547: ECD_03547 - DUF1198 family protein, at 3,730,317 to 3,730,769 _03547 ECD_03548: ECD_03548 - adenine permease, high affinity; adenine:H+ symporter, at 3,730,822 to 3,732,156 _03548 Position (kb) 3730 3731Strain fitness (log2 ratio) -2 -1 0 1at 3729.377 kb on + strand, within ECD_03546at 3729.377 kb on + strand, within ECD_03546at 3729.378 kb on - strand, within ECD_03546at 3729.378 kb on - strand, within ECD_03546at 3729.378 kb on - strand, within ECD_03546at 3729.379 kb on + strand, within ECD_03546at 3729.379 kb on + strand, within ECD_03546at 3729.379 kb on + strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.380 kb on - strand, within ECD_03546at 3729.394 kb on + strand, within ECD_03546at 3729.394 kb on + strand, within ECD_03546at 3729.394 kb on + strand, within ECD_03546at 3729.394 kb on + strand, within ECD_03546at 3729.395 kb on - strand, within ECD_03546at 3729.395 kb on - strand, within ECD_03546at 3729.395 kb on - strand, within ECD_03546at 3729.468 kb on + strand, within ECD_03546at 3729.468 kb on + strand, within ECD_03546at 3729.469 kb on - strand, within ECD_03546at 3729.469 kb on - strand, within ECD_03546at 3729.482 kb on + strand, within ECD_03546at 3729.545 kb on + strand, within ECD_03546at 3729.546 kb on - strand, within ECD_03546at 3729.645 kb on - strand, within ECD_03546at 3729.772 kb on - strand, within ECD_03546at 3729.792 kb on - strand, within ECD_03546at 3729.792 kb on - strand, within ECD_03546at 3729.843 kb on - strand, within ECD_03546at 3729.843 kb on - strand, within ECD_03546at 3729.843 kb on - strand, within ECD_03546at 3729.885 kb on - strand, within ECD_03546at 3730.094 kb on + strand, within ECD_03546at 3730.095 kb on - strand, within ECD_03546at 3730.095 kb on - strand, within ECD_03546at 3730.150 kb on - strandat 3730.214 kb on + strandat 3730.294 kb on + strandat 3730.295 kb on - strandat 3730.319 kb on - strandat 3730.382 kb on + strand, within ECD_03547at 3730.383 kb on - strand, within ECD_03547at 3730.592 kb on - strand, within ECD_03547at 3730.596 kb on + strand, within ECD_03547at 3730.650 kb on + strand, within ECD_03547at 3730.651 kb on - strand, within ECD_03547at 3730.800 kb on - strandat 3730.800 kb on - strandat 3730.820 kb on + strandat 3730.821 kb on - strandat 3730.821 kb on - strandat 3730.823 kb on + strandat 3730.824 kb on - strandat 3730.824 kb on - strandat 3730.923 kb on - strandat 3730.929 kb on + strandat 3730.930 kb on - strandat 3730.986 kb on + strand, within ECD_03548at 3730.987 kb on - strand, within ECD_03548at 3731.011 kb on - strand, within ECD_03548at 3731.124 kb on + strand, within ECD_03548at 3731.124 kb on + strand, within ECD_03548at 3731.125 kb on - strand, within ECD_03548at 3731.125 kb on - strand, within ECD_03548at 3731.139 kb on + strand, within ECD_03548at 3731.140 kb on - strand, within ECD_03548at 3731.140 kb on - strand, within ECD_03548at 3731.196 kb on + strand, within ECD_03548at 3731.207 kb on + strand, within ECD_03548at 3731.207 kb on + strand, within ECD_03548at 3731.268 kb on - strand, within ECD_03548at 3731.309 kb on - strand, within ECD_03548at 3731.330 kb on - strand, within ECD_03548at 3731.338 kb on + strand, within ECD_03548at 3731.575 kb on - strand, within ECD_03548at 3731.722 kb on + strand, within ECD_03548

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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3,729,377 + ECD_03546 0.34 -0.2
3,729,377 + ECD_03546 0.34 +0.1
3,729,378 - ECD_03546 0.34 -1.5
3,729,378 - ECD_03546 0.34 +0.4
3,729,378 - ECD_03546 0.34 +1.0
3,729,379 + ECD_03546 0.34 -0.2
3,729,379 + ECD_03546 0.34 -0.2
3,729,379 + ECD_03546 0.34 -0.5
3,729,380 - ECD_03546 0.34 -0.2
3,729,380 - ECD_03546 0.34 -0.2
3,729,380 - ECD_03546 0.34 -0.1
3,729,380 - ECD_03546 0.34 -0.1
3,729,380 - ECD_03546 0.34 +0.4
3,729,380 - ECD_03546 0.34 -1.2
3,729,380 - ECD_03546 0.34 -0.3
3,729,394 + ECD_03546 0.35 +0.2
3,729,394 + ECD_03546 0.35 +0.9
3,729,394 + ECD_03546 0.35 +0.6
3,729,394 + ECD_03546 0.35 +0.5
3,729,395 - ECD_03546 0.35 -0.3
3,729,395 - ECD_03546 0.35 +0.8
3,729,395 - ECD_03546 0.35 +0.4
3,729,468 + ECD_03546 0.41 +0.4
3,729,468 + ECD_03546 0.41 -0.1
3,729,469 - ECD_03546 0.41 +0.0
3,729,469 - ECD_03546 0.41 +1.0
3,729,482 + ECD_03546 0.42 -0.2
3,729,545 + ECD_03546 0.46 +0.3
3,729,546 - ECD_03546 0.46 +0.0
3,729,645 - ECD_03546 0.54 -0.4
3,729,772 - ECD_03546 0.63 +0.8
3,729,792 - ECD_03546 0.65 +0.1
3,729,792 - ECD_03546 0.65 -0.5
3,729,843 - ECD_03546 0.68 -0.6
3,729,843 - ECD_03546 0.68 -0.6
3,729,843 - ECD_03546 0.68 +0.7
3,729,885 - ECD_03546 0.71 +0.4
3,730,094 + ECD_03546 0.87 +0.2
3,730,095 - ECD_03546 0.87 +0.4
3,730,095 - ECD_03546 0.87 +0.3
3,730,150 - +0.8
3,730,214 + -0.2
3,730,294 + +0.1
3,730,295 - -1.0
3,730,319 - -0.1
3,730,382 + ECD_03547 0.14 +0.4
3,730,383 - ECD_03547 0.15 -0.3
3,730,592 - ECD_03547 0.61 -1.1
3,730,596 + ECD_03547 0.62 -1.1
3,730,650 + ECD_03547 0.74 -2.0
3,730,651 - ECD_03547 0.74 -0.1
3,730,800 - -0.2
3,730,800 - +0.1
3,730,820 + +0.6
3,730,821 - +0.1
3,730,821 - +0.8
3,730,823 + +0.8
3,730,824 - -0.9
3,730,824 - -0.5
3,730,923 - +0.1
3,730,929 + +1.0
3,730,930 - -0.3
3,730,986 + ECD_03548 0.12 +0.4
3,730,987 - ECD_03548 0.12 +0.0
3,731,011 - ECD_03548 0.14 +0.0
3,731,124 + ECD_03548 0.23 -0.5
3,731,124 + ECD_03548 0.23 +0.5
3,731,125 - ECD_03548 0.23 -0.6
3,731,125 - ECD_03548 0.23 -0.7
3,731,139 + ECD_03548 0.24 +1.2
3,731,140 - ECD_03548 0.24 -0.3
3,731,140 - ECD_03548 0.24 -0.2
3,731,196 + ECD_03548 0.28 -0.2
3,731,207 + ECD_03548 0.29 +0.7
3,731,207 + ECD_03548 0.29 -0.5
3,731,268 - ECD_03548 0.33 -1.1
3,731,309 - ECD_03548 0.36 +0.3
3,731,330 - ECD_03548 0.38 -0.1
3,731,338 + ECD_03548 0.39 +0.1
3,731,575 - ECD_03548 0.56 -0.1
3,731,722 + ECD_03548 0.67 +0.1

Or see this region's nucleotide sequence