Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03431 and ECD_03432 are separated by 3 nucleotides ECD_03432 and ECD_03433 overlap by 4 nucleotides ECD_03433 and ECD_03434 overlap by 8 nucleotides
ECD_03431: ECD_03431 - 2,3-diketo-L-gulonate-binding periplasmic protein, at 3,608,246 to 3,609,232
_03431
ECD_03432: ECD_03432 - L-xylulose kinase, at 3,609,236 to 3,610,732
_03432
ECD_03433: ECD_03433 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 3,610,729 to 3,611,391
_03433
ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244
_03434
Position (kb)
3609
3610
3611 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3608.481 kb on + strand, within ECD_03431 at 3608.481 kb on + strand, within ECD_03431 at 3608.482 kb on - strand, within ECD_03431 at 3608.661 kb on + strand, within ECD_03431 at 3608.717 kb on - strand, within ECD_03431 at 3608.831 kb on + strand, within ECD_03431 at 3608.831 kb on + strand, within ECD_03431 at 3608.832 kb on - strand, within ECD_03431 at 3608.942 kb on + strand, within ECD_03431 at 3608.988 kb on + strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3609.037 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.042 kb on - strand, within ECD_03431 at 3609.230 kb on + strand at 3609.259 kb on - strand at 3609.424 kb on + strand, within ECD_03432 at 3609.425 kb on - strand, within ECD_03432 at 3609.652 kb on - strand, within ECD_03432 at 3609.652 kb on - strand, within ECD_03432 at 3609.735 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.767 kb on - strand, within ECD_03432 at 3609.806 kb on + strand, within ECD_03432 at 3609.807 kb on - strand, within ECD_03432 at 3610.006 kb on + strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.141 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.375 kb on + strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.425 kb on + strand, within ECD_03432 at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.714 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.729 kb on - strand at 3610.729 kb on - strand at 3610.803 kb on - strand, within ECD_03433 at 3610.803 kb on - strand, within ECD_03433 at 3611.109 kb on + strand, within ECD_03433 at 3611.131 kb on + strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.212 kb on - strand, within ECD_03433 at 3611.367 kb on + strand at 3611.368 kb on - strand at 3611.368 kb on - strand at 3611.408 kb on + strand at 3611.409 kb on - strand at 3611.709 kb on + strand, within ECD_03434
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 3,608,481 + ECD_03431 0.24 -0.1 3,608,481 + ECD_03431 0.24 -0.3 3,608,482 - ECD_03431 0.24 -0.9 3,608,661 + ECD_03431 0.42 -0.4 3,608,717 - ECD_03431 0.48 -0.0 3,608,831 + ECD_03431 0.59 -0.4 3,608,831 + ECD_03431 0.59 -1.0 3,608,832 - ECD_03431 0.59 -0.2 3,608,942 + ECD_03431 0.71 -0.3 3,608,988 + ECD_03431 0.75 +0.8 3,608,989 - ECD_03431 0.75 -0.5 3,608,989 - ECD_03431 0.75 -0.2 3,608,989 - ECD_03431 0.75 -0.4 3,608,989 - ECD_03431 0.75 -0.2 3,609,037 + ECD_03431 0.80 -0.8 3,609,041 + ECD_03431 0.81 +0.7 3,609,041 + ECD_03431 0.81 +0.4 3,609,041 + ECD_03431 0.81 -0.3 3,609,041 + ECD_03431 0.81 -1.5 3,609,042 - ECD_03431 0.81 +0.2 3,609,230 + +0.6 3,609,259 - -0.9 3,609,424 + ECD_03432 0.13 -0.1 3,609,425 - ECD_03432 0.13 -0.0 3,609,652 - ECD_03432 0.28 +0.0 3,609,652 - ECD_03432 0.28 +0.9 3,609,735 + ECD_03432 0.33 -0.4 3,609,766 + ECD_03432 0.35 -0.4 3,609,766 + ECD_03432 0.35 -0.0 3,609,767 - ECD_03432 0.35 +0.3 3,609,806 + ECD_03432 0.38 +0.1 3,609,807 - ECD_03432 0.38 +0.3 3,610,006 + ECD_03432 0.51 +0.9 3,610,063 - ECD_03432 0.55 +0.1 3,610,063 - ECD_03432 0.55 +0.4 3,610,085 + ECD_03432 0.57 +0.6 3,610,085 + ECD_03432 0.57 -0.3 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 +0.9 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 +0.5 3,610,092 - ECD_03432 0.57 +1.0 3,610,092 - ECD_03432 0.57 -0.0 3,610,092 - ECD_03432 0.57 -0.4 3,610,100 + ECD_03432 0.58 +0.4 3,610,100 + ECD_03432 0.58 +0.1 3,610,141 + ECD_03432 0.60 +2.0 3,610,265 + ECD_03432 0.69 +0.4 3,610,265 + ECD_03432 0.69 -0.7 3,610,352 + ECD_03432 0.75 -1.6 3,610,352 + ECD_03432 0.75 -0.4 3,610,352 + ECD_03432 0.75 +0.4 3,610,352 + ECD_03432 0.75 +0.7 3,610,352 + ECD_03432 0.75 -0.4 3,610,352 + ECD_03432 0.75 +0.1 3,610,353 - ECD_03432 0.75 +0.1 3,610,353 - ECD_03432 0.75 +0.4 3,610,353 - ECD_03432 0.75 -2.9 3,610,375 + ECD_03432 0.76 -0.9 3,610,376 - ECD_03432 0.76 +0.8 3,610,376 - ECD_03432 0.76 -0.4 3,610,425 + ECD_03432 0.79 +0.9 3,610,631 - +0.2 3,610,631 - +0.3 3,610,631 - -2.5 3,610,631 - -0.0 3,610,714 + -0.1 3,610,728 + -0.3 3,610,728 + -0.8 3,610,728 + +0.5 3,610,729 - -0.1 3,610,729 - -1.3 3,610,803 - ECD_03433 0.11 +0.1 3,610,803 - ECD_03433 0.11 +2.4 3,611,109 + ECD_03433 0.57 +1.3 3,611,131 + ECD_03433 0.61 +0.1 3,611,132 - ECD_03433 0.61 +0.1 3,611,132 - ECD_03433 0.61 +0.1 3,611,132 - ECD_03433 0.61 -1.4 3,611,212 - ECD_03433 0.73 -1.0 3,611,367 + -0.2 3,611,368 - -0.1 3,611,368 - +0.5 3,611,408 + +0.7 3,611,409 - -0.1 3,611,709 + ECD_03434 0.38 -1.0
Or see this region's nucleotide sequence