Strain Fitness in Escherichia coli BL21 around ECD_03308

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03307 and ECD_03308 are separated by 423 nucleotidesECD_03308 and ECD_03309 are separated by 198 nucleotides ECD_03307: ECD_03307 - leucine transporter subunit, at 3,458,821 to 3,459,930 _03307 ECD_03308: ECD_03308 - PanD autocleavage accelerator, panothenate synthesis, at 3,460,354 to 3,460,737 _03308 ECD_03309: ECD_03309 - branched-chain amino acid ABC transporter periplasmic binding protein, at 3,460,936 to 3,462,039 _03309 Position (kb) 3460 3461Strain fitness (log2 ratio) -1 0 1at 3459.413 kb on + strand, within ECD_03307at 3459.414 kb on - strand, within ECD_03307at 3459.471 kb on - strand, within ECD_03307at 3459.471 kb on - strand, within ECD_03307at 3459.513 kb on + strand, within ECD_03307at 3459.519 kb on + strand, within ECD_03307at 3459.520 kb on - strand, within ECD_03307at 3459.582 kb on + strand, within ECD_03307at 3459.583 kb on - strand, within ECD_03307at 3459.596 kb on + strand, within ECD_03307at 3459.596 kb on + strand, within ECD_03307at 3459.596 kb on + strand, within ECD_03307at 3459.597 kb on - strand, within ECD_03307at 3459.600 kb on + strand, within ECD_03307at 3459.619 kb on - strand, within ECD_03307at 3459.647 kb on + strand, within ECD_03307at 3459.647 kb on + strand, within ECD_03307at 3459.651 kb on + strand, within ECD_03307at 3459.651 kb on + strand, within ECD_03307at 3459.651 kb on + strand, within ECD_03307at 3459.652 kb on - strand, within ECD_03307at 3459.652 kb on - strand, within ECD_03307at 3459.717 kb on - strand, within ECD_03307at 3459.745 kb on - strand, within ECD_03307at 3459.745 kb on - strand, within ECD_03307at 3459.910 kb on - strandat 3459.930 kb on + strandat 3459.980 kb on - strandat 3460.245 kb on - strandat 3460.340 kb on + strandat 3460.430 kb on - strand, within ECD_03308at 3460.467 kb on + strand, within ECD_03308at 3460.591 kb on + strand, within ECD_03308at 3460.704 kb on + strandat 3460.862 kb on + strandat 3460.888 kb on + strandat 3460.888 kb on + strandat 3460.898 kb on + strandat 3460.930 kb on + strandat 3460.937 kb on + strandat 3460.938 kb on - strandat 3460.938 kb on - strandat 3460.979 kb on - strandat 3461.129 kb on + strand, within ECD_03309at 3461.129 kb on + strand, within ECD_03309at 3461.216 kb on + strand, within ECD_03309at 3461.217 kb on - strand, within ECD_03309at 3461.217 kb on - strand, within ECD_03309at 3461.269 kb on - strand, within ECD_03309at 3461.375 kb on + strand, within ECD_03309at 3461.469 kb on + strand, within ECD_03309at 3461.551 kb on - strand, within ECD_03309at 3461.551 kb on - strand, within ECD_03309at 3461.577 kb on + strand, within ECD_03309at 3461.578 kb on - strand, within ECD_03309at 3461.578 kb on - strand, within ECD_03309at 3461.578 kb on - strand, within ECD_03309at 3461.579 kb on + strand, within ECD_03309at 3461.579 kb on + strand, within ECD_03309at 3461.579 kb on + strand, within ECD_03309at 3461.580 kb on - strand, within ECD_03309at 3461.639 kb on + strand, within ECD_03309at 3461.639 kb on + strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.640 kb on - strand, within ECD_03309at 3461.643 kb on + strand, within ECD_03309at 3461.686 kb on + strand, within ECD_03309at 3461.705 kb on + strand, within ECD_03309

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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3,459,413 + ECD_03307 0.53 +0.2
3,459,414 - ECD_03307 0.53 +0.0
3,459,471 - ECD_03307 0.59 -0.5
3,459,471 - ECD_03307 0.59 +0.4
3,459,513 + ECD_03307 0.62 -0.1
3,459,519 + ECD_03307 0.63 +0.3
3,459,520 - ECD_03307 0.63 +0.2
3,459,582 + ECD_03307 0.69 +0.1
3,459,583 - ECD_03307 0.69 +0.3
3,459,596 + ECD_03307 0.70 -0.5
3,459,596 + ECD_03307 0.70 -0.1
3,459,596 + ECD_03307 0.70 -0.1
3,459,597 - ECD_03307 0.70 +0.6
3,459,600 + ECD_03307 0.70 +0.4
3,459,619 - ECD_03307 0.72 -0.2
3,459,647 + ECD_03307 0.74 +1.1
3,459,647 + ECD_03307 0.74 +0.2
3,459,651 + ECD_03307 0.75 +0.5
3,459,651 + ECD_03307 0.75 -0.2
3,459,651 + ECD_03307 0.75 -0.2
3,459,652 - ECD_03307 0.75 +0.5
3,459,652 - ECD_03307 0.75 -0.2
3,459,717 - ECD_03307 0.81 +1.0
3,459,745 - ECD_03307 0.83 -0.1
3,459,745 - ECD_03307 0.83 -1.1
3,459,910 - -0.1
3,459,930 + -1.0
3,459,980 - -0.6
3,460,245 - -0.3
3,460,340 + +0.4
3,460,430 - ECD_03308 0.20 -0.1
3,460,467 + ECD_03308 0.29 -1.1
3,460,591 + ECD_03308 0.62 -0.1
3,460,704 + -0.1
3,460,862 + -0.2
3,460,888 + +0.5
3,460,888 + +0.3
3,460,898 + +0.6
3,460,930 + +0.6
3,460,937 + +0.7
3,460,938 - +0.1
3,460,938 - +0.7
3,460,979 - -0.1
3,461,129 + ECD_03309 0.17 -0.3
3,461,129 + ECD_03309 0.17 +0.1
3,461,216 + ECD_03309 0.25 +0.4
3,461,217 - ECD_03309 0.25 +0.1
3,461,217 - ECD_03309 0.25 -0.6
3,461,269 - ECD_03309 0.30 +0.4
3,461,375 + ECD_03309 0.40 +1.1
3,461,469 + ECD_03309 0.48 +0.2
3,461,551 - ECD_03309 0.56 -0.1
3,461,551 - ECD_03309 0.56 +0.2
3,461,577 + ECD_03309 0.58 +0.1
3,461,578 - ECD_03309 0.58 -0.2
3,461,578 - ECD_03309 0.58 +0.2
3,461,578 - ECD_03309 0.58 -0.2
3,461,579 + ECD_03309 0.58 -0.3
3,461,579 + ECD_03309 0.58 +1.3
3,461,579 + ECD_03309 0.58 +0.6
3,461,580 - ECD_03309 0.58 +0.8
3,461,639 + ECD_03309 0.64 +0.2
3,461,639 + ECD_03309 0.64 +0.1
3,461,640 - ECD_03309 0.64 -0.7
3,461,640 - ECD_03309 0.64 -0.4
3,461,640 - ECD_03309 0.64 +0.2
3,461,640 - ECD_03309 0.64 -1.6
3,461,643 + ECD_03309 0.64 +0.1
3,461,686 + ECD_03309 0.68 +0.4
3,461,705 + ECD_03309 0.70 +0.6

Or see this region's nucleotide sequence