Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03307 and ECD_03308 are separated by 423 nucleotides ECD_03308 and ECD_03309 are separated by 198 nucleotides
ECD_03307: ECD_03307 - leucine transporter subunit, at 3,458,821 to 3,459,930
_03307
ECD_03308: ECD_03308 - PanD autocleavage accelerator, panothenate synthesis, at 3,460,354 to 3,460,737
_03308
ECD_03309: ECD_03309 - branched-chain amino acid ABC transporter periplasmic binding protein, at 3,460,936 to 3,462,039
_03309
Position (kb)
3460
3461 Strain fitness (log2 ratio)
-1
0
1 at 3459.413 kb on + strand, within ECD_03307 at 3459.414 kb on - strand, within ECD_03307 at 3459.471 kb on - strand, within ECD_03307 at 3459.471 kb on - strand, within ECD_03307 at 3459.513 kb on + strand, within ECD_03307 at 3459.519 kb on + strand, within ECD_03307 at 3459.520 kb on - strand, within ECD_03307 at 3459.582 kb on + strand, within ECD_03307 at 3459.583 kb on - strand, within ECD_03307 at 3459.596 kb on + strand, within ECD_03307 at 3459.596 kb on + strand, within ECD_03307 at 3459.596 kb on + strand, within ECD_03307 at 3459.597 kb on - strand, within ECD_03307 at 3459.600 kb on + strand, within ECD_03307 at 3459.619 kb on - strand, within ECD_03307 at 3459.647 kb on + strand, within ECD_03307 at 3459.647 kb on + strand, within ECD_03307 at 3459.651 kb on + strand, within ECD_03307 at 3459.651 kb on + strand, within ECD_03307 at 3459.651 kb on + strand, within ECD_03307 at 3459.652 kb on - strand, within ECD_03307 at 3459.652 kb on - strand, within ECD_03307 at 3459.717 kb on - strand, within ECD_03307 at 3459.745 kb on - strand, within ECD_03307 at 3459.745 kb on - strand, within ECD_03307 at 3459.910 kb on - strand at 3459.930 kb on + strand at 3459.980 kb on - strand at 3460.245 kb on - strand at 3460.340 kb on + strand at 3460.430 kb on - strand, within ECD_03308 at 3460.467 kb on + strand, within ECD_03308 at 3460.591 kb on + strand, within ECD_03308 at 3460.704 kb on + strand at 3460.862 kb on + strand at 3460.888 kb on + strand at 3460.888 kb on + strand at 3460.898 kb on + strand at 3460.930 kb on + strand at 3460.937 kb on + strand at 3460.938 kb on - strand at 3460.938 kb on - strand at 3460.979 kb on - strand at 3461.129 kb on + strand, within ECD_03309 at 3461.129 kb on + strand, within ECD_03309 at 3461.216 kb on + strand, within ECD_03309 at 3461.217 kb on - strand, within ECD_03309 at 3461.217 kb on - strand, within ECD_03309 at 3461.269 kb on - strand, within ECD_03309 at 3461.375 kb on + strand, within ECD_03309 at 3461.469 kb on + strand, within ECD_03309 at 3461.551 kb on - strand, within ECD_03309 at 3461.551 kb on - strand, within ECD_03309 at 3461.577 kb on + strand, within ECD_03309 at 3461.578 kb on - strand, within ECD_03309 at 3461.578 kb on - strand, within ECD_03309 at 3461.578 kb on - strand, within ECD_03309 at 3461.579 kb on + strand, within ECD_03309 at 3461.579 kb on + strand, within ECD_03309 at 3461.579 kb on + strand, within ECD_03309 at 3461.580 kb on - strand, within ECD_03309 at 3461.639 kb on + strand, within ECD_03309 at 3461.639 kb on + strand, within ECD_03309 at 3461.640 kb on - strand, within ECD_03309 at 3461.640 kb on - strand, within ECD_03309 at 3461.640 kb on - strand, within ECD_03309 at 3461.640 kb on - strand, within ECD_03309 at 3461.643 kb on + strand, within ECD_03309 at 3461.686 kb on + strand, within ECD_03309 at 3461.705 kb on + strand, within ECD_03309
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 3,459,413 + ECD_03307 0.53 +0.2 3,459,414 - ECD_03307 0.53 +0.0 3,459,471 - ECD_03307 0.59 -0.5 3,459,471 - ECD_03307 0.59 +0.4 3,459,513 + ECD_03307 0.62 -0.1 3,459,519 + ECD_03307 0.63 +0.3 3,459,520 - ECD_03307 0.63 +0.2 3,459,582 + ECD_03307 0.69 +0.1 3,459,583 - ECD_03307 0.69 +0.3 3,459,596 + ECD_03307 0.70 -0.5 3,459,596 + ECD_03307 0.70 -0.1 3,459,596 + ECD_03307 0.70 -0.1 3,459,597 - ECD_03307 0.70 +0.6 3,459,600 + ECD_03307 0.70 +0.4 3,459,619 - ECD_03307 0.72 -0.2 3,459,647 + ECD_03307 0.74 +1.1 3,459,647 + ECD_03307 0.74 +0.2 3,459,651 + ECD_03307 0.75 +0.5 3,459,651 + ECD_03307 0.75 -0.2 3,459,651 + ECD_03307 0.75 -0.2 3,459,652 - ECD_03307 0.75 +0.5 3,459,652 - ECD_03307 0.75 -0.2 3,459,717 - ECD_03307 0.81 +1.0 3,459,745 - ECD_03307 0.83 -0.1 3,459,745 - ECD_03307 0.83 -1.1 3,459,910 - -0.1 3,459,930 + -1.0 3,459,980 - -0.6 3,460,245 - -0.3 3,460,340 + +0.4 3,460,430 - ECD_03308 0.20 -0.1 3,460,467 + ECD_03308 0.29 -1.1 3,460,591 + ECD_03308 0.62 -0.1 3,460,704 + -0.1 3,460,862 + -0.2 3,460,888 + +0.5 3,460,888 + +0.3 3,460,898 + +0.6 3,460,930 + +0.6 3,460,937 + +0.7 3,460,938 - +0.1 3,460,938 - +0.7 3,460,979 - -0.1 3,461,129 + ECD_03309 0.17 -0.3 3,461,129 + ECD_03309 0.17 +0.1 3,461,216 + ECD_03309 0.25 +0.4 3,461,217 - ECD_03309 0.25 +0.1 3,461,217 - ECD_03309 0.25 -0.6 3,461,269 - ECD_03309 0.30 +0.4 3,461,375 + ECD_03309 0.40 +1.1 3,461,469 + ECD_03309 0.48 +0.2 3,461,551 - ECD_03309 0.56 -0.1 3,461,551 - ECD_03309 0.56 +0.2 3,461,577 + ECD_03309 0.58 +0.1 3,461,578 - ECD_03309 0.58 -0.2 3,461,578 - ECD_03309 0.58 +0.2 3,461,578 - ECD_03309 0.58 -0.2 3,461,579 + ECD_03309 0.58 -0.3 3,461,579 + ECD_03309 0.58 +1.3 3,461,579 + ECD_03309 0.58 +0.6 3,461,580 - ECD_03309 0.58 +0.8 3,461,639 + ECD_03309 0.64 +0.2 3,461,639 + ECD_03309 0.64 +0.1 3,461,640 - ECD_03309 0.64 -0.7 3,461,640 - ECD_03309 0.64 -0.4 3,461,640 - ECD_03309 0.64 +0.2 3,461,640 - ECD_03309 0.64 -1.6 3,461,643 + ECD_03309 0.64 +0.1 3,461,686 + ECD_03309 0.68 +0.4 3,461,705 + ECD_03309 0.70 +0.6
Or see this region's nucleotide sequence