Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03030 and ECD_03031 are separated by 108 nucleotides ECD_03031 and ECD_03032 are separated by 246 nucleotides ECD_03032 and ECD_03033 are separated by 148 nucleotides
ECD_03030: ECD_03030 - lipoprotein involved in osmotic sensitivity and filamentation, at 3,176,539 to 3,177,423
_03030
ECD_03031: ECD_03031 - polynucleotide phosphorylase/polyadenylase, at 3,177,532 to 3,179,667
_03031
ECD_03032: ECD_03032 - 30S ribosomal subunit protein S15, at 3,179,914 to 3,180,183
_03032
ECD_03033: ECD_03033 - tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase, at 3,180,332 to 3,181,276
_03033
Position (kb)
3177
3178
3179
3180 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3176.532 kb on - strand at 3176.532 kb on - strand at 3176.532 kb on - strand at 3176.541 kb on - strand at 3176.541 kb on - strand at 3176.626 kb on - strand at 3176.690 kb on - strand, within ECD_03030 at 3176.690 kb on - strand, within ECD_03030 at 3176.690 kb on - strand, within ECD_03030 at 3176.690 kb on - strand, within ECD_03030 at 3176.690 kb on - strand, within ECD_03030 at 3176.694 kb on - strand, within ECD_03030 at 3176.694 kb on - strand, within ECD_03030 at 3176.694 kb on - strand, within ECD_03030 at 3176.697 kb on - strand, within ECD_03030 at 3176.697 kb on - strand, within ECD_03030 at 3176.701 kb on - strand, within ECD_03030 at 3176.701 kb on - strand, within ECD_03030 at 3176.705 kb on - strand, within ECD_03030 at 3176.705 kb on - strand, within ECD_03030 at 3176.705 kb on - strand, within ECD_03030 at 3176.709 kb on - strand, within ECD_03030 at 3176.913 kb on - strand, within ECD_03030 at 3177.000 kb on - strand, within ECD_03030 at 3177.000 kb on - strand, within ECD_03030 at 3177.000 kb on - strand, within ECD_03030 at 3177.003 kb on - strand, within ECD_03030 at 3177.005 kb on - strand, within ECD_03030 at 3177.005 kb on - strand, within ECD_03030 at 3177.033 kb on - strand, within ECD_03030 at 3177.039 kb on - strand, within ECD_03030 at 3177.039 kb on - strand, within ECD_03030 at 3177.039 kb on - strand, within ECD_03030 at 3177.039 kb on - strand, within ECD_03030 at 3177.059 kb on - strand, within ECD_03030 at 3177.059 kb on - strand, within ECD_03030 at 3177.078 kb on - strand, within ECD_03030 at 3177.111 kb on - strand, within ECD_03030 at 3177.111 kb on - strand, within ECD_03030 at 3177.111 kb on - strand, within ECD_03030 at 3177.111 kb on - strand, within ECD_03030 at 3177.111 kb on - strand, within ECD_03030 at 3177.113 kb on - strand, within ECD_03030 at 3177.113 kb on - strand, within ECD_03030 at 3177.119 kb on - strand, within ECD_03030 at 3177.210 kb on - strand, within ECD_03030 at 3177.210 kb on - strand, within ECD_03030 at 3177.230 kb on - strand, within ECD_03030 at 3177.285 kb on + strand, within ECD_03030 at 3177.286 kb on - strand, within ECD_03030 at 3177.311 kb on - strand, within ECD_03030 at 3177.360 kb on + strand at 3177.361 kb on - strand at 3177.361 kb on - strand at 3177.361 kb on - strand at 3177.381 kb on + strand at 3177.381 kb on + strand at 3177.382 kb on - strand at 3177.382 kb on - strand at 3177.534 kb on - strand at 3177.534 kb on - strand at 3177.601 kb on - strand at 3177.787 kb on - strand, within ECD_03031 at 3177.794 kb on + strand, within ECD_03031 at 3177.794 kb on + strand, within ECD_03031 at 3177.795 kb on - strand, within ECD_03031 at 3177.795 kb on - strand, within ECD_03031 at 3177.843 kb on + strand, within ECD_03031 at 3177.843 kb on + strand, within ECD_03031 at 3177.999 kb on + strand, within ECD_03031 at 3178.027 kb on - strand, within ECD_03031 at 3178.129 kb on - strand, within ECD_03031 at 3178.238 kb on - strand, within ECD_03031 at 3178.244 kb on + strand, within ECD_03031 at 3178.244 kb on + strand, within ECD_03031 at 3178.244 kb on + strand, within ECD_03031 at 3178.244 kb on + strand, within ECD_03031 at 3178.245 kb on - strand, within ECD_03031 at 3178.245 kb on - strand, within ECD_03031 at 3178.245 kb on - strand, within ECD_03031 at 3178.245 kb on - strand, within ECD_03031 at 3178.351 kb on - strand, within ECD_03031 at 3178.394 kb on - strand, within ECD_03031 at 3178.394 kb on - strand, within ECD_03031 at 3178.394 kb on - strand, within ECD_03031 at 3178.678 kb on - strand, within ECD_03031 at 3178.742 kb on - strand, within ECD_03031 at 3179.054 kb on - strand, within ECD_03031 at 3179.186 kb on + strand, within ECD_03031 at 3179.186 kb on + strand, within ECD_03031 at 3179.186 kb on + strand, within ECD_03031 at 3179.187 kb on - strand, within ECD_03031 at 3179.187 kb on - strand, within ECD_03031 at 3179.201 kb on + strand, within ECD_03031 at 3179.201 kb on + strand, within ECD_03031 at 3179.470 kb on - strand at 3179.637 kb on - strand at 3179.646 kb on + strand at 3179.647 kb on - strand at 3179.670 kb on + strand at 3179.671 kb on - strand at 3179.671 kb on - strand at 3179.716 kb on - strand at 3179.770 kb on - strand at 3179.826 kb on - strand at 3179.835 kb on - strand at 3179.835 kb on - strand at 3179.840 kb on - strand at 3180.251 kb on - strand at 3180.292 kb on - strand at 3180.333 kb on + strand at 3180.464 kb on - strand, within ECD_03033 at 3180.490 kb on - strand, within ECD_03033 at 3180.654 kb on + strand, within ECD_03033 at 3180.659 kb on - strand, within ECD_03033 at 3180.659 kb on - strand, within ECD_03033 at 3180.663 kb on - strand, within ECD_03033 at 3180.663 kb on - strand, within ECD_03033
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 3,176,532 - +0.0 3,176,532 - -0.1 3,176,532 - -0.2 3,176,541 - -0.5 3,176,541 - +0.2 3,176,626 - -0.4 3,176,690 - ECD_03030 0.17 +0.6 3,176,690 - ECD_03030 0.17 -0.3 3,176,690 - ECD_03030 0.17 -2.1 3,176,690 - ECD_03030 0.17 +0.2 3,176,690 - ECD_03030 0.17 -0.4 3,176,694 - ECD_03030 0.18 -0.5 3,176,694 - ECD_03030 0.18 +0.1 3,176,694 - ECD_03030 0.18 -0.2 3,176,697 - ECD_03030 0.18 -0.8 3,176,697 - ECD_03030 0.18 -1.8 3,176,701 - ECD_03030 0.18 +0.3 3,176,701 - ECD_03030 0.18 +0.1 3,176,705 - ECD_03030 0.19 +0.4 3,176,705 - ECD_03030 0.19 +0.6 3,176,705 - ECD_03030 0.19 +0.3 3,176,709 - ECD_03030 0.19 +0.0 3,176,913 - ECD_03030 0.42 -0.7 3,177,000 - ECD_03030 0.52 +0.2 3,177,000 - ECD_03030 0.52 +0.4 3,177,000 - ECD_03030 0.52 +0.2 3,177,003 - ECD_03030 0.52 +0.6 3,177,005 - ECD_03030 0.53 +0.2 3,177,005 - ECD_03030 0.53 +0.3 3,177,033 - ECD_03030 0.56 -0.4 3,177,039 - ECD_03030 0.56 -0.1 3,177,039 - ECD_03030 0.56 +0.5 3,177,039 - ECD_03030 0.56 +0.1 3,177,039 - ECD_03030 0.56 -0.1 3,177,059 - ECD_03030 0.59 +0.5 3,177,059 - ECD_03030 0.59 +0.5 3,177,078 - ECD_03030 0.61 +0.0 3,177,111 - ECD_03030 0.65 -0.5 3,177,111 - ECD_03030 0.65 +0.2 3,177,111 - ECD_03030 0.65 +1.2 3,177,111 - ECD_03030 0.65 -0.2 3,177,111 - ECD_03030 0.65 +0.3 3,177,113 - ECD_03030 0.65 +0.3 3,177,113 - ECD_03030 0.65 +0.2 3,177,119 - ECD_03030 0.66 +0.1 3,177,210 - ECD_03030 0.76 +0.5 3,177,210 - ECD_03030 0.76 -0.1 3,177,230 - ECD_03030 0.78 +0.2 3,177,285 + ECD_03030 0.84 +1.9 3,177,286 - ECD_03030 0.84 -0.2 3,177,311 - ECD_03030 0.87 -0.0 3,177,360 + +0.4 3,177,361 - +1.1 3,177,361 - -0.0 3,177,361 - -0.7 3,177,381 + -0.7 3,177,381 + -1.2 3,177,382 - -2.2 3,177,382 - +0.1 3,177,534 - -0.4 3,177,534 - +0.3 3,177,601 - -0.5 3,177,787 - ECD_03031 0.12 -0.4 3,177,794 + ECD_03031 0.12 -1.7 3,177,794 + ECD_03031 0.12 +1.5 3,177,795 - ECD_03031 0.12 -2.2 3,177,795 - ECD_03031 0.12 -0.9 3,177,843 + ECD_03031 0.15 +0.5 3,177,843 + ECD_03031 0.15 +0.8 3,177,999 + ECD_03031 0.22 +0.1 3,178,027 - ECD_03031 0.23 -0.5 3,178,129 - ECD_03031 0.28 -1.1 3,178,238 - ECD_03031 0.33 -0.5 3,178,244 + ECD_03031 0.33 -0.7 3,178,244 + ECD_03031 0.33 +1.8 3,178,244 + ECD_03031 0.33 +0.9 3,178,244 + ECD_03031 0.33 +0.2 3,178,245 - ECD_03031 0.33 -1.7 3,178,245 - ECD_03031 0.33 -1.1 3,178,245 - ECD_03031 0.33 -1.2 3,178,245 - ECD_03031 0.33 +0.4 3,178,351 - ECD_03031 0.38 -1.5 3,178,394 - ECD_03031 0.40 -1.2 3,178,394 - ECD_03031 0.40 +0.3 3,178,394 - ECD_03031 0.40 +0.2 3,178,678 - ECD_03031 0.54 -0.8 3,178,742 - ECD_03031 0.57 -0.8 3,179,054 - ECD_03031 0.71 +1.2 3,179,186 + ECD_03031 0.77 +0.3 3,179,186 + ECD_03031 0.77 -1.2 3,179,186 + ECD_03031 0.77 +0.3 3,179,187 - ECD_03031 0.77 +1.3 3,179,187 - ECD_03031 0.77 +0.4 3,179,201 + ECD_03031 0.78 -1.7 3,179,201 + ECD_03031 0.78 +0.5 3,179,470 - +0.0 3,179,637 - -0.1 3,179,646 + -0.7 3,179,647 - -0.7 3,179,670 + +0.0 3,179,671 - +0.2 3,179,671 - +1.8 3,179,716 - +0.0 3,179,770 - +0.3 3,179,826 - +0.7 3,179,835 - -0.7 3,179,835 - -0.6 3,179,840 - -0.9 3,180,251 - -0.2 3,180,292 - -0.7 3,180,333 + -0.1 3,180,464 - ECD_03033 0.14 +0.2 3,180,490 - ECD_03033 0.17 +0.1 3,180,654 + ECD_03033 0.34 +0.0 3,180,659 - ECD_03033 0.35 -0.9 3,180,659 - ECD_03033 0.35 -0.2 3,180,663 - ECD_03033 0.35 -0.4 3,180,663 - ECD_03033 0.35 -1.2
Or see this region's nucleotide sequence