Strain Fitness in Escherichia coli BL21 around ECD_03031

Experiment: Bas33

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03030 and ECD_03031 are separated by 108 nucleotidesECD_03031 and ECD_03032 are separated by 246 nucleotidesECD_03032 and ECD_03033 are separated by 148 nucleotides ECD_03030: ECD_03030 - lipoprotein involved in osmotic sensitivity and filamentation, at 3,176,539 to 3,177,423 _03030 ECD_03031: ECD_03031 - polynucleotide phosphorylase/polyadenylase, at 3,177,532 to 3,179,667 _03031 ECD_03032: ECD_03032 - 30S ribosomal subunit protein S15, at 3,179,914 to 3,180,183 _03032 ECD_03033: ECD_03033 - tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase, at 3,180,332 to 3,181,276 _03033 Position (kb) 3177 3178 3179 3180Strain fitness (log2 ratio) -2 -1 0 1 2at 3176.532 kb on - strandat 3176.532 kb on - strandat 3176.532 kb on - strandat 3176.541 kb on - strandat 3176.541 kb on - strandat 3176.626 kb on - strandat 3176.690 kb on - strand, within ECD_03030at 3176.690 kb on - strand, within ECD_03030at 3176.690 kb on - strand, within ECD_03030at 3176.690 kb on - strand, within ECD_03030at 3176.690 kb on - strand, within ECD_03030at 3176.694 kb on - strand, within ECD_03030at 3176.694 kb on - strand, within ECD_03030at 3176.694 kb on - strand, within ECD_03030at 3176.697 kb on - strand, within ECD_03030at 3176.697 kb on - strand, within ECD_03030at 3176.701 kb on - strand, within ECD_03030at 3176.701 kb on - strand, within ECD_03030at 3176.705 kb on - strand, within ECD_03030at 3176.705 kb on - strand, within ECD_03030at 3176.705 kb on - strand, within ECD_03030at 3176.709 kb on - strand, within ECD_03030at 3176.913 kb on - strand, within ECD_03030at 3177.000 kb on - strand, within ECD_03030at 3177.000 kb on - strand, within ECD_03030at 3177.000 kb on - strand, within ECD_03030at 3177.003 kb on - strand, within ECD_03030at 3177.005 kb on - strand, within ECD_03030at 3177.005 kb on - strand, within ECD_03030at 3177.033 kb on - strand, within ECD_03030at 3177.039 kb on - strand, within ECD_03030at 3177.039 kb on - strand, within ECD_03030at 3177.039 kb on - strand, within ECD_03030at 3177.039 kb on - strand, within ECD_03030at 3177.059 kb on - strand, within ECD_03030at 3177.059 kb on - strand, within ECD_03030at 3177.078 kb on - strand, within ECD_03030at 3177.111 kb on - strand, within ECD_03030at 3177.111 kb on - strand, within ECD_03030at 3177.111 kb on - strand, within ECD_03030at 3177.111 kb on - strand, within ECD_03030at 3177.111 kb on - strand, within ECD_03030at 3177.113 kb on - strand, within ECD_03030at 3177.113 kb on - strand, within ECD_03030at 3177.119 kb on - strand, within ECD_03030at 3177.210 kb on - strand, within ECD_03030at 3177.210 kb on - strand, within ECD_03030at 3177.230 kb on - strand, within ECD_03030at 3177.285 kb on + strand, within ECD_03030at 3177.286 kb on - strand, within ECD_03030at 3177.311 kb on - strand, within ECD_03030at 3177.360 kb on + strandat 3177.361 kb on - strandat 3177.361 kb on - strandat 3177.361 kb on - strandat 3177.381 kb on + strandat 3177.381 kb on + strandat 3177.382 kb on - strandat 3177.382 kb on - strandat 3177.534 kb on - strandat 3177.534 kb on - strandat 3177.601 kb on - strandat 3177.787 kb on - strand, within ECD_03031at 3177.794 kb on + strand, within ECD_03031at 3177.794 kb on + strand, within ECD_03031at 3177.795 kb on - strand, within ECD_03031at 3177.795 kb on - strand, within ECD_03031at 3177.843 kb on + strand, within ECD_03031at 3177.843 kb on + strand, within ECD_03031at 3177.999 kb on + strand, within ECD_03031at 3178.027 kb on - strand, within ECD_03031at 3178.129 kb on - strand, within ECD_03031at 3178.238 kb on - strand, within ECD_03031at 3178.244 kb on + strand, within ECD_03031at 3178.244 kb on + strand, within ECD_03031at 3178.244 kb on + strand, within ECD_03031at 3178.244 kb on + strand, within ECD_03031at 3178.245 kb on - strand, within ECD_03031at 3178.245 kb on - strand, within ECD_03031at 3178.245 kb on - strand, within ECD_03031at 3178.245 kb on - strand, within ECD_03031at 3178.351 kb on - strand, within ECD_03031at 3178.394 kb on - strand, within ECD_03031at 3178.394 kb on - strand, within ECD_03031at 3178.394 kb on - strand, within ECD_03031at 3178.678 kb on - strand, within ECD_03031at 3178.742 kb on - strand, within ECD_03031at 3179.054 kb on - strand, within ECD_03031at 3179.186 kb on + strand, within ECD_03031at 3179.186 kb on + strand, within ECD_03031at 3179.186 kb on + strand, within ECD_03031at 3179.187 kb on - strand, within ECD_03031at 3179.187 kb on - strand, within ECD_03031at 3179.201 kb on + strand, within ECD_03031at 3179.201 kb on + strand, within ECD_03031at 3179.470 kb on - strandat 3179.637 kb on - strandat 3179.646 kb on + strandat 3179.647 kb on - strandat 3179.670 kb on + strandat 3179.671 kb on - strandat 3179.671 kb on - strandat 3179.716 kb on - strandat 3179.770 kb on - strandat 3179.826 kb on - strandat 3179.835 kb on - strandat 3179.835 kb on - strandat 3179.840 kb on - strandat 3180.251 kb on - strandat 3180.292 kb on - strandat 3180.333 kb on + strandat 3180.464 kb on - strand, within ECD_03033at 3180.490 kb on - strand, within ECD_03033at 3180.654 kb on + strand, within ECD_03033at 3180.659 kb on - strand, within ECD_03033at 3180.659 kb on - strand, within ECD_03033at 3180.663 kb on - strand, within ECD_03033at 3180.663 kb on - strand, within ECD_03033

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
remove
3,176,532 - +0.0
3,176,532 - -0.1
3,176,532 - -0.2
3,176,541 - -0.5
3,176,541 - +0.2
3,176,626 - -0.4
3,176,690 - ECD_03030 0.17 +0.6
3,176,690 - ECD_03030 0.17 -0.3
3,176,690 - ECD_03030 0.17 -2.1
3,176,690 - ECD_03030 0.17 +0.2
3,176,690 - ECD_03030 0.17 -0.4
3,176,694 - ECD_03030 0.18 -0.5
3,176,694 - ECD_03030 0.18 +0.1
3,176,694 - ECD_03030 0.18 -0.2
3,176,697 - ECD_03030 0.18 -0.8
3,176,697 - ECD_03030 0.18 -1.8
3,176,701 - ECD_03030 0.18 +0.3
3,176,701 - ECD_03030 0.18 +0.1
3,176,705 - ECD_03030 0.19 +0.4
3,176,705 - ECD_03030 0.19 +0.6
3,176,705 - ECD_03030 0.19 +0.3
3,176,709 - ECD_03030 0.19 +0.0
3,176,913 - ECD_03030 0.42 -0.7
3,177,000 - ECD_03030 0.52 +0.2
3,177,000 - ECD_03030 0.52 +0.4
3,177,000 - ECD_03030 0.52 +0.2
3,177,003 - ECD_03030 0.52 +0.6
3,177,005 - ECD_03030 0.53 +0.2
3,177,005 - ECD_03030 0.53 +0.3
3,177,033 - ECD_03030 0.56 -0.4
3,177,039 - ECD_03030 0.56 -0.1
3,177,039 - ECD_03030 0.56 +0.5
3,177,039 - ECD_03030 0.56 +0.1
3,177,039 - ECD_03030 0.56 -0.1
3,177,059 - ECD_03030 0.59 +0.5
3,177,059 - ECD_03030 0.59 +0.5
3,177,078 - ECD_03030 0.61 +0.0
3,177,111 - ECD_03030 0.65 -0.5
3,177,111 - ECD_03030 0.65 +0.2
3,177,111 - ECD_03030 0.65 +1.2
3,177,111 - ECD_03030 0.65 -0.2
3,177,111 - ECD_03030 0.65 +0.3
3,177,113 - ECD_03030 0.65 +0.3
3,177,113 - ECD_03030 0.65 +0.2
3,177,119 - ECD_03030 0.66 +0.1
3,177,210 - ECD_03030 0.76 +0.5
3,177,210 - ECD_03030 0.76 -0.1
3,177,230 - ECD_03030 0.78 +0.2
3,177,285 + ECD_03030 0.84 +1.9
3,177,286 - ECD_03030 0.84 -0.2
3,177,311 - ECD_03030 0.87 -0.0
3,177,360 + +0.4
3,177,361 - +1.1
3,177,361 - -0.0
3,177,361 - -0.7
3,177,381 + -0.7
3,177,381 + -1.2
3,177,382 - -2.2
3,177,382 - +0.1
3,177,534 - -0.4
3,177,534 - +0.3
3,177,601 - -0.5
3,177,787 - ECD_03031 0.12 -0.4
3,177,794 + ECD_03031 0.12 -1.7
3,177,794 + ECD_03031 0.12 +1.5
3,177,795 - ECD_03031 0.12 -2.2
3,177,795 - ECD_03031 0.12 -0.9
3,177,843 + ECD_03031 0.15 +0.5
3,177,843 + ECD_03031 0.15 +0.8
3,177,999 + ECD_03031 0.22 +0.1
3,178,027 - ECD_03031 0.23 -0.5
3,178,129 - ECD_03031 0.28 -1.1
3,178,238 - ECD_03031 0.33 -0.5
3,178,244 + ECD_03031 0.33 -0.7
3,178,244 + ECD_03031 0.33 +1.8
3,178,244 + ECD_03031 0.33 +0.9
3,178,244 + ECD_03031 0.33 +0.2
3,178,245 - ECD_03031 0.33 -1.7
3,178,245 - ECD_03031 0.33 -1.1
3,178,245 - ECD_03031 0.33 -1.2
3,178,245 - ECD_03031 0.33 +0.4
3,178,351 - ECD_03031 0.38 -1.5
3,178,394 - ECD_03031 0.40 -1.2
3,178,394 - ECD_03031 0.40 +0.3
3,178,394 - ECD_03031 0.40 +0.2
3,178,678 - ECD_03031 0.54 -0.8
3,178,742 - ECD_03031 0.57 -0.8
3,179,054 - ECD_03031 0.71 +1.2
3,179,186 + ECD_03031 0.77 +0.3
3,179,186 + ECD_03031 0.77 -1.2
3,179,186 + ECD_03031 0.77 +0.3
3,179,187 - ECD_03031 0.77 +1.3
3,179,187 - ECD_03031 0.77 +0.4
3,179,201 + ECD_03031 0.78 -1.7
3,179,201 + ECD_03031 0.78 +0.5
3,179,470 - +0.0
3,179,637 - -0.1
3,179,646 + -0.7
3,179,647 - -0.7
3,179,670 + +0.0
3,179,671 - +0.2
3,179,671 - +1.8
3,179,716 - +0.0
3,179,770 - +0.3
3,179,826 - +0.7
3,179,835 - -0.7
3,179,835 - -0.6
3,179,840 - -0.9
3,180,251 - -0.2
3,180,292 - -0.7
3,180,333 + -0.1
3,180,464 - ECD_03033 0.14 +0.2
3,180,490 - ECD_03033 0.17 +0.1
3,180,654 + ECD_03033 0.34 +0.0
3,180,659 - ECD_03033 0.35 -0.9
3,180,659 - ECD_03033 0.35 -0.2
3,180,663 - ECD_03033 0.35 -0.4
3,180,663 - ECD_03033 0.35 -1.2

Or see this region's nucleotide sequence