Strain Fitness in Escherichia coli BL21 around ECD_03017

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03015 and ECD_03016 are separated by 19 nucleotidesECD_03016 and ECD_03017 are separated by 9 nucleotidesECD_03017 and ECD_03018 are separated by 113 nucleotides ECD_03014: ECD_03014 - OM lipoprotein stimulator of MrcA transpeptidase, at 3,161,899 to 3,163,935 _03014 ECD_03015: ECD_03015 - UPF0102 family protein, at 3,163,893 to 3,164,288 _03015 ECD_03016: ECD_03016 - DnaA initiator-associating factor for replication initiation, at 3,164,308 to 3,164,898 _03016 ECD_03017: ECD_03017 - outer membrane lipoprotein, at 3,164,908 to 3,165,483 _03017 ECD_03018: ECD_03018 - putative inner membrane permease, at 3,165,597 to 3,166,637 _03018 Position (kb) 3164 3165 3166Strain fitness (log2 ratio) -2 -1 0 1 2at 3163.919 kb on + strandat 3163.919 kb on + strandat 3163.920 kb on - strandat 3163.934 kb on - strandat 3163.934 kb on - strandat 3164.051 kb on - strand, within ECD_03015at 3164.086 kb on + strand, within ECD_03015at 3164.086 kb on + strand, within ECD_03015at 3164.086 kb on + strand, within ECD_03015at 3164.086 kb on + strand, within ECD_03015at 3164.086 kb on + strand, within ECD_03015at 3164.087 kb on - strand, within ECD_03015at 3164.087 kb on - strand, within ECD_03015at 3164.087 kb on - strand, within ECD_03015at 3164.110 kb on - strand, within ECD_03015at 3164.110 kb on - strand, within ECD_03015at 3164.286 kb on + strandat 3164.286 kb on + strandat 3164.286 kb on + strandat 3164.286 kb on + strandat 3164.528 kb on + strand, within ECD_03016at 3164.529 kb on - strand, within ECD_03016at 3164.547 kb on + strand, within ECD_03016at 3164.602 kb on + strand, within ECD_03016at 3164.603 kb on - strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.642 kb on + strand, within ECD_03016at 3164.643 kb on - strand, within ECD_03016at 3164.715 kb on + strand, within ECD_03016at 3164.715 kb on + strand, within ECD_03016at 3164.769 kb on - strand, within ECD_03016at 3164.832 kb on + strand, within ECD_03016at 3164.833 kb on - strand, within ECD_03016at 3164.905 kb on + strandat 3164.906 kb on - strandat 3164.906 kb on - strandat 3164.937 kb on + strandat 3165.276 kb on + strand, within ECD_03017at 3165.276 kb on + strand, within ECD_03017at 3165.277 kb on - strand, within ECD_03017at 3165.282 kb on + strand, within ECD_03017at 3165.468 kb on + strandat 3165.468 kb on + strandat 3165.478 kb on - strandat 3165.478 kb on - strandat 3165.478 kb on - strandat 3165.494 kb on + strandat 3165.523 kb on + strandat 3165.532 kb on + strandat 3165.567 kb on + strandat 3165.663 kb on + strandat 3165.696 kb on - strandat 3165.922 kb on - strand, within ECD_03018at 3165.935 kb on - strand, within ECD_03018at 3165.948 kb on - strand, within ECD_03018at 3165.948 kb on - strand, within ECD_03018at 3166.420 kb on + strand, within ECD_03018at 3166.457 kb on + strand, within ECD_03018at 3166.479 kb on - strand, within ECD_03018

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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3,163,919 + -0.5
3,163,919 + -2.0
3,163,920 - -0.1
3,163,934 - -0.2
3,163,934 - +1.1
3,164,051 - ECD_03015 0.40 -0.5
3,164,086 + ECD_03015 0.49 -0.0
3,164,086 + ECD_03015 0.49 -1.0
3,164,086 + ECD_03015 0.49 +0.2
3,164,086 + ECD_03015 0.49 -0.3
3,164,086 + ECD_03015 0.49 -0.1
3,164,087 - ECD_03015 0.49 +0.6
3,164,087 - ECD_03015 0.49 +0.2
3,164,087 - ECD_03015 0.49 +0.3
3,164,110 - ECD_03015 0.55 -0.4
3,164,110 - ECD_03015 0.55 +0.8
3,164,286 + -0.7
3,164,286 + -0.4
3,164,286 + -0.2
3,164,286 + -0.1
3,164,528 + ECD_03016 0.37 +0.1
3,164,529 - ECD_03016 0.37 -0.1
3,164,547 + ECD_03016 0.40 -0.7
3,164,602 + ECD_03016 0.50 -0.0
3,164,603 - ECD_03016 0.50 +1.4
3,164,642 + ECD_03016 0.57 +0.1
3,164,642 + ECD_03016 0.57 +1.3
3,164,642 + ECD_03016 0.57 +1.6
3,164,642 + ECD_03016 0.57 +0.0
3,164,642 + ECD_03016 0.57 -1.0
3,164,642 + ECD_03016 0.57 -0.2
3,164,642 + ECD_03016 0.57 +0.3
3,164,642 + ECD_03016 0.57 +0.7
3,164,642 + ECD_03016 0.57 +0.6
3,164,642 + ECD_03016 0.57 -0.9
3,164,642 + ECD_03016 0.57 +0.4
3,164,643 - ECD_03016 0.57 +0.8
3,164,715 + ECD_03016 0.69 +0.3
3,164,715 + ECD_03016 0.69 -1.0
3,164,769 - ECD_03016 0.78 +1.8
3,164,832 + ECD_03016 0.89 +1.1
3,164,833 - ECD_03016 0.89 +0.5
3,164,905 + -0.6
3,164,906 - +0.9
3,164,906 - +0.3
3,164,937 + -1.7
3,165,276 + ECD_03017 0.64 +0.0
3,165,276 + ECD_03017 0.64 +0.2
3,165,277 - ECD_03017 0.64 -1.8
3,165,282 + ECD_03017 0.65 -0.2
3,165,468 + +0.3
3,165,468 + -1.2
3,165,478 - +0.2
3,165,478 - -0.2
3,165,478 - -0.1
3,165,494 + +0.7
3,165,523 + +0.1
3,165,532 + -1.0
3,165,567 + +0.3
3,165,663 + -0.2
3,165,696 - +0.5
3,165,922 - ECD_03018 0.31 +0.1
3,165,935 - ECD_03018 0.32 -0.7
3,165,948 - ECD_03018 0.34 +0.8
3,165,948 - ECD_03018 0.34 +0.5
3,166,420 + ECD_03018 0.79 +1.0
3,166,457 + ECD_03018 0.83 +0.2
3,166,479 - ECD_03018 0.85 -0.0

Or see this region's nucleotide sequence