Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03015 and ECD_03016 are separated by 19 nucleotides ECD_03016 and ECD_03017 are separated by 9 nucleotides ECD_03017 and ECD_03018 are separated by 113 nucleotides
ECD_03014: ECD_03014 - OM lipoprotein stimulator of MrcA transpeptidase, at 3,161,899 to 3,163,935
_03014
ECD_03015: ECD_03015 - UPF0102 family protein, at 3,163,893 to 3,164,288
_03015
ECD_03016: ECD_03016 - DnaA initiator-associating factor for replication initiation, at 3,164,308 to 3,164,898
_03016
ECD_03017: ECD_03017 - outer membrane lipoprotein, at 3,164,908 to 3,165,483
_03017
ECD_03018: ECD_03018 - putative inner membrane permease, at 3,165,597 to 3,166,637
_03018
Position (kb)
3164
3165
3166 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3163.919 kb on + strand at 3163.919 kb on + strand at 3163.920 kb on - strand at 3163.934 kb on - strand at 3163.934 kb on - strand at 3164.051 kb on - strand, within ECD_03015 at 3164.086 kb on + strand, within ECD_03015 at 3164.086 kb on + strand, within ECD_03015 at 3164.086 kb on + strand, within ECD_03015 at 3164.086 kb on + strand, within ECD_03015 at 3164.086 kb on + strand, within ECD_03015 at 3164.087 kb on - strand, within ECD_03015 at 3164.087 kb on - strand, within ECD_03015 at 3164.087 kb on - strand, within ECD_03015 at 3164.110 kb on - strand, within ECD_03015 at 3164.110 kb on - strand, within ECD_03015 at 3164.286 kb on + strand at 3164.286 kb on + strand at 3164.286 kb on + strand at 3164.286 kb on + strand at 3164.528 kb on + strand, within ECD_03016 at 3164.529 kb on - strand, within ECD_03016 at 3164.547 kb on + strand, within ECD_03016 at 3164.602 kb on + strand, within ECD_03016 at 3164.603 kb on - strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.642 kb on + strand, within ECD_03016 at 3164.643 kb on - strand, within ECD_03016 at 3164.715 kb on + strand, within ECD_03016 at 3164.715 kb on + strand, within ECD_03016 at 3164.769 kb on - strand, within ECD_03016 at 3164.832 kb on + strand, within ECD_03016 at 3164.833 kb on - strand, within ECD_03016 at 3164.905 kb on + strand at 3164.906 kb on - strand at 3164.906 kb on - strand at 3164.937 kb on + strand at 3165.276 kb on + strand, within ECD_03017 at 3165.276 kb on + strand, within ECD_03017 at 3165.277 kb on - strand, within ECD_03017 at 3165.282 kb on + strand, within ECD_03017 at 3165.468 kb on + strand at 3165.468 kb on + strand at 3165.478 kb on - strand at 3165.478 kb on - strand at 3165.478 kb on - strand at 3165.494 kb on + strand at 3165.523 kb on + strand at 3165.532 kb on + strand at 3165.567 kb on + strand at 3165.663 kb on + strand at 3165.696 kb on - strand at 3165.922 kb on - strand, within ECD_03018 at 3165.935 kb on - strand, within ECD_03018 at 3165.948 kb on - strand, within ECD_03018 at 3165.948 kb on - strand, within ECD_03018 at 3166.420 kb on + strand, within ECD_03018 at 3166.457 kb on + strand, within ECD_03018 at 3166.479 kb on - strand, within ECD_03018
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 3,163,919 + -0.5 3,163,919 + -2.0 3,163,920 - -0.1 3,163,934 - -0.2 3,163,934 - +1.1 3,164,051 - ECD_03015 0.40 -0.5 3,164,086 + ECD_03015 0.49 -0.0 3,164,086 + ECD_03015 0.49 -1.0 3,164,086 + ECD_03015 0.49 +0.2 3,164,086 + ECD_03015 0.49 -0.3 3,164,086 + ECD_03015 0.49 -0.1 3,164,087 - ECD_03015 0.49 +0.6 3,164,087 - ECD_03015 0.49 +0.2 3,164,087 - ECD_03015 0.49 +0.3 3,164,110 - ECD_03015 0.55 -0.4 3,164,110 - ECD_03015 0.55 +0.8 3,164,286 + -0.7 3,164,286 + -0.4 3,164,286 + -0.2 3,164,286 + -0.1 3,164,528 + ECD_03016 0.37 +0.1 3,164,529 - ECD_03016 0.37 -0.1 3,164,547 + ECD_03016 0.40 -0.7 3,164,602 + ECD_03016 0.50 -0.0 3,164,603 - ECD_03016 0.50 +1.4 3,164,642 + ECD_03016 0.57 +0.1 3,164,642 + ECD_03016 0.57 +1.3 3,164,642 + ECD_03016 0.57 +1.6 3,164,642 + ECD_03016 0.57 +0.0 3,164,642 + ECD_03016 0.57 -1.0 3,164,642 + ECD_03016 0.57 -0.2 3,164,642 + ECD_03016 0.57 +0.3 3,164,642 + ECD_03016 0.57 +0.7 3,164,642 + ECD_03016 0.57 +0.6 3,164,642 + ECD_03016 0.57 -0.9 3,164,642 + ECD_03016 0.57 +0.4 3,164,643 - ECD_03016 0.57 +0.8 3,164,715 + ECD_03016 0.69 +0.3 3,164,715 + ECD_03016 0.69 -1.0 3,164,769 - ECD_03016 0.78 +1.8 3,164,832 + ECD_03016 0.89 +1.1 3,164,833 - ECD_03016 0.89 +0.5 3,164,905 + -0.6 3,164,906 - +0.9 3,164,906 - +0.3 3,164,937 + -1.7 3,165,276 + ECD_03017 0.64 +0.0 3,165,276 + ECD_03017 0.64 +0.2 3,165,277 - ECD_03017 0.64 -1.8 3,165,282 + ECD_03017 0.65 -0.2 3,165,468 + +0.3 3,165,468 + -1.2 3,165,478 - +0.2 3,165,478 - -0.2 3,165,478 - -0.1 3,165,494 + +0.7 3,165,523 + +0.1 3,165,532 + -1.0 3,165,567 + +0.3 3,165,663 + -0.2 3,165,696 - +0.5 3,165,922 - ECD_03018 0.31 +0.1 3,165,935 - ECD_03018 0.32 -0.7 3,165,948 - ECD_03018 0.34 +0.8 3,165,948 - ECD_03018 0.34 +0.5 3,166,420 + ECD_03018 0.79 +1.0 3,166,457 + ECD_03018 0.83 +0.2 3,166,479 - ECD_03018 0.85 -0.0
Or see this region's nucleotide sequence