Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02839 and ECD_02840 are separated by 146 nucleotides ECD_02840 and ECD_02841 are separated by 65 nucleotides
ECD_02839: ECD_02839 - putative secretion pathway protein, C-type protein, at 2,972,371 to 2,973,201
_02839
ECD_02840: ECD_02840 - secretin (GspDbeta) OM localization lipoprotein pilotin, at 2,973,348 to 2,973,758
_02840
ECD_02841: ECD_02841 - bifunctional prepilin leader peptidase/ methylase, at 2,973,824 to 2,974,633
_02841
Position (kb)
2973
2974 Strain fitness (log2 ratio)
-2
-1
0
1 at 2972.413 kb on + strand at 2972.414 kb on - strand at 2972.447 kb on - strand at 2972.447 kb on - strand at 2972.595 kb on + strand, within ECD_02839 at 2972.596 kb on - strand, within ECD_02839 at 2972.618 kb on + strand, within ECD_02839 at 2972.618 kb on + strand, within ECD_02839 at 2972.618 kb on + strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.619 kb on - strand, within ECD_02839 at 2972.805 kb on - strand, within ECD_02839 at 2972.879 kb on + strand, within ECD_02839 at 2972.880 kb on - strand, within ECD_02839 at 2972.955 kb on + strand, within ECD_02839 at 2972.956 kb on - strand, within ECD_02839 at 2972.996 kb on - strand, within ECD_02839 at 2973.018 kb on - strand, within ECD_02839 at 2973.046 kb on + strand, within ECD_02839 at 2973.142 kb on - strand at 2973.437 kb on + strand, within ECD_02840 at 2973.727 kb on - strand at 2973.781 kb on + strand at 2973.989 kb on + strand, within ECD_02841 at 2974.004 kb on + strand, within ECD_02841 at 2974.007 kb on + strand, within ECD_02841 at 2974.007 kb on + strand, within ECD_02841 at 2974.023 kb on - strand, within ECD_02841 at 2974.023 kb on - strand, within ECD_02841 at 2974.044 kb on - strand, within ECD_02841 at 2974.241 kb on + strand, within ECD_02841 at 2974.242 kb on - strand, within ECD_02841 at 2974.463 kb on + strand, within ECD_02841 at 2974.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,972,413 + +0.1 2,972,414 - -0.6 2,972,447 - +0.2 2,972,447 - +1.0 2,972,595 + ECD_02839 0.27 -1.3 2,972,596 - ECD_02839 0.27 -0.6 2,972,618 + ECD_02839 0.30 +0.2 2,972,618 + ECD_02839 0.30 +0.3 2,972,618 + ECD_02839 0.30 -0.7 2,972,619 - ECD_02839 0.30 -0.0 2,972,619 - ECD_02839 0.30 -2.6 2,972,619 - ECD_02839 0.30 +0.4 2,972,619 - ECD_02839 0.30 +0.8 2,972,805 - ECD_02839 0.52 +1.0 2,972,879 + ECD_02839 0.61 +0.1 2,972,880 - ECD_02839 0.61 +0.1 2,972,955 + ECD_02839 0.70 -0.3 2,972,956 - ECD_02839 0.70 +0.2 2,972,996 - ECD_02839 0.75 -0.5 2,973,018 - ECD_02839 0.78 -0.8 2,973,046 + ECD_02839 0.81 -0.4 2,973,142 - +0.2 2,973,437 + ECD_02840 0.22 -0.5 2,973,727 - +0.1 2,973,781 + +0.4 2,973,989 + ECD_02841 0.20 +0.5 2,974,004 + ECD_02841 0.22 +0.6 2,974,007 + ECD_02841 0.23 -0.0 2,974,007 + ECD_02841 0.23 -0.5 2,974,023 - ECD_02841 0.25 +0.2 2,974,023 - ECD_02841 0.25 -0.6 2,974,044 - ECD_02841 0.27 -0.2 2,974,241 + ECD_02841 0.51 -1.4 2,974,242 - ECD_02841 0.52 -0.5 2,974,463 + ECD_02841 0.79 +0.5 2,974,653 + -0.2
Or see this region's nucleotide sequence