Strain Fitness in Escherichia coli BL21 around ECD_02840

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02839 and ECD_02840 are separated by 146 nucleotidesECD_02840 and ECD_02841 are separated by 65 nucleotides ECD_02839: ECD_02839 - putative secretion pathway protein, C-type protein, at 2,972,371 to 2,973,201 _02839 ECD_02840: ECD_02840 - secretin (GspDbeta) OM localization lipoprotein pilotin, at 2,973,348 to 2,973,758 _02840 ECD_02841: ECD_02841 - bifunctional prepilin leader peptidase/ methylase, at 2,973,824 to 2,974,633 _02841 Position (kb) 2973 2974Strain fitness (log2 ratio) -2 -1 0 1at 2972.413 kb on + strandat 2972.414 kb on - strandat 2972.447 kb on - strandat 2972.447 kb on - strandat 2972.595 kb on + strand, within ECD_02839at 2972.596 kb on - strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.618 kb on + strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.619 kb on - strand, within ECD_02839at 2972.805 kb on - strand, within ECD_02839at 2972.879 kb on + strand, within ECD_02839at 2972.880 kb on - strand, within ECD_02839at 2972.955 kb on + strand, within ECD_02839at 2972.956 kb on - strand, within ECD_02839at 2972.996 kb on - strand, within ECD_02839at 2973.018 kb on - strand, within ECD_02839at 2973.046 kb on + strand, within ECD_02839at 2973.142 kb on - strandat 2973.437 kb on + strand, within ECD_02840at 2973.727 kb on - strandat 2973.781 kb on + strandat 2973.989 kb on + strand, within ECD_02841at 2974.004 kb on + strand, within ECD_02841at 2974.007 kb on + strand, within ECD_02841at 2974.007 kb on + strand, within ECD_02841at 2974.023 kb on - strand, within ECD_02841at 2974.023 kb on - strand, within ECD_02841at 2974.044 kb on - strand, within ECD_02841at 2974.241 kb on + strand, within ECD_02841at 2974.242 kb on - strand, within ECD_02841at 2974.463 kb on + strand, within ECD_02841at 2974.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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2,972,413 + +0.1
2,972,414 - -0.6
2,972,447 - +0.2
2,972,447 - +1.0
2,972,595 + ECD_02839 0.27 -1.3
2,972,596 - ECD_02839 0.27 -0.6
2,972,618 + ECD_02839 0.30 +0.2
2,972,618 + ECD_02839 0.30 +0.3
2,972,618 + ECD_02839 0.30 -0.7
2,972,619 - ECD_02839 0.30 -0.0
2,972,619 - ECD_02839 0.30 -2.6
2,972,619 - ECD_02839 0.30 +0.4
2,972,619 - ECD_02839 0.30 +0.8
2,972,805 - ECD_02839 0.52 +1.0
2,972,879 + ECD_02839 0.61 +0.1
2,972,880 - ECD_02839 0.61 +0.1
2,972,955 + ECD_02839 0.70 -0.3
2,972,956 - ECD_02839 0.70 +0.2
2,972,996 - ECD_02839 0.75 -0.5
2,973,018 - ECD_02839 0.78 -0.8
2,973,046 + ECD_02839 0.81 -0.4
2,973,142 - +0.2
2,973,437 + ECD_02840 0.22 -0.5
2,973,727 - +0.1
2,973,781 + +0.4
2,973,989 + ECD_02841 0.20 +0.5
2,974,004 + ECD_02841 0.22 +0.6
2,974,007 + ECD_02841 0.23 -0.0
2,974,007 + ECD_02841 0.23 -0.5
2,974,023 - ECD_02841 0.25 +0.2
2,974,023 - ECD_02841 0.25 -0.6
2,974,044 - ECD_02841 0.27 -0.2
2,974,241 + ECD_02841 0.51 -1.4
2,974,242 - ECD_02841 0.52 -0.5
2,974,463 + ECD_02841 0.79 +0.5
2,974,653 + -0.2

Or see this region's nucleotide sequence