Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02831 and ECD_02832 are separated by 38 nucleotides ECD_02832 and ECD_02833 are separated by 38 nucleotides ECD_02833 and ECD_02834 overlap by 4 nucleotides ECD_02834 and ECD_02835 are separated by 3 nucleotides
ECD_02831: ECD_02831 - putative type II secretion protein GspK, at 2,964,582 to 2,965,517
_02831
ECD_02832: ECD_02832 - putative type II secretion protein GspJ, at 2,965,556 to 2,966,119
_02832
ECD_02833: ECD_02833 - putative type II secretion protein GspI, at 2,966,158 to 2,966,529
_02833
ECD_02834: ECD_02834 - putative type II secretion protein GspH, at 2,966,526 to 2,967,089
_02834
ECD_02835: ECD_02835 - putative type II secretion protein GspG, at 2,967,093 to 2,967,548
_02835
Position (kb)
2965
2966
2967 Strain fitness (log2 ratio)
-2
-1
0
1 at 2964.703 kb on + strand, within ECD_02831 at 2964.732 kb on + strand, within ECD_02831 at 2964.746 kb on + strand, within ECD_02831 at 2964.747 kb on - strand, within ECD_02831 at 2964.829 kb on - strand, within ECD_02831 at 2964.853 kb on - strand, within ECD_02831 at 2964.901 kb on - strand, within ECD_02831 at 2964.905 kb on + strand, within ECD_02831 at 2965.036 kb on + strand, within ECD_02831 at 2965.037 kb on - strand, within ECD_02831 at 2965.060 kb on + strand, within ECD_02831 at 2965.112 kb on + strand, within ECD_02831 at 2965.112 kb on + strand, within ECD_02831 at 2965.150 kb on + strand, within ECD_02831 at 2965.194 kb on + strand, within ECD_02831 at 2965.509 kb on + strand at 2965.562 kb on + strand at 2965.563 kb on - strand at 2965.690 kb on - strand, within ECD_02832 at 2966.295 kb on - strand, within ECD_02833 at 2966.363 kb on + strand, within ECD_02833 at 2966.364 kb on - strand, within ECD_02833 at 2966.364 kb on - strand, within ECD_02833 at 2966.614 kb on + strand, within ECD_02834 at 2966.750 kb on - strand, within ECD_02834 at 2966.750 kb on - strand, within ECD_02834 at 2966.810 kb on + strand, within ECD_02834 at 2966.898 kb on + strand, within ECD_02834 at 2966.898 kb on + strand, within ECD_02834 at 2967.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,964,703 + ECD_02831 0.13 -0.2 2,964,732 + ECD_02831 0.16 -1.9 2,964,746 + ECD_02831 0.18 -0.0 2,964,747 - ECD_02831 0.18 +0.3 2,964,829 - ECD_02831 0.26 +0.7 2,964,853 - ECD_02831 0.29 +0.1 2,964,901 - ECD_02831 0.34 +0.5 2,964,905 + ECD_02831 0.35 -0.4 2,965,036 + ECD_02831 0.49 -1.0 2,965,037 - ECD_02831 0.49 -0.0 2,965,060 + ECD_02831 0.51 -1.7 2,965,112 + ECD_02831 0.57 +0.5 2,965,112 + ECD_02831 0.57 +1.0 2,965,150 + ECD_02831 0.61 +0.8 2,965,194 + ECD_02831 0.65 -0.0 2,965,509 + -0.8 2,965,562 + -1.3 2,965,563 - +0.3 2,965,690 - ECD_02832 0.24 -1.1 2,966,295 - ECD_02833 0.37 -0.7 2,966,363 + ECD_02833 0.55 +0.5 2,966,364 - ECD_02833 0.55 -0.6 2,966,364 - ECD_02833 0.55 +1.3 2,966,614 + ECD_02834 0.16 +1.7 2,966,750 - ECD_02834 0.40 +0.4 2,966,750 - ECD_02834 0.40 +0.1 2,966,810 + ECD_02834 0.50 -0.2 2,966,898 + ECD_02834 0.66 +0.1 2,966,898 + ECD_02834 0.66 +0.1 2,967,119 + +0.4
Or see this region's nucleotide sequence