Strain Fitness in Escherichia coli BL21 around ECD_02788

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02787 and ECD_02788 are separated by 175 nucleotidesECD_02788 and ECD_02789 are separated by 183 nucleotidesECD_02789 and ECD_02790 overlap by 1 nucleotides ECD_02787: ECD_02787 - periplasmic L-asparaginase 2, at 2,930,450 to 2,931,496 _02787 ECD_02788: ECD_02788 - DUF2884 family putative periplasmic protein, at 2,931,672 to 2,932,391 _02788 ECD_02789: ECD_02789 - DUF469 family protein, at 2,932,575 to 2,932,901 _02789 ECD_02790: ECD_02790 - tRNA m(7)G46 methyltransferase, SAM-dependent, at 2,932,901 to 2,933,620 _02790 Position (kb) 2931 2932 2933Strain fitness (log2 ratio) -2 -1 0 1at 2930.680 kb on + strand, within ECD_02787at 2930.680 kb on + strand, within ECD_02787at 2930.680 kb on + strand, within ECD_02787at 2930.681 kb on - strand, within ECD_02787at 2930.710 kb on + strand, within ECD_02787at 2930.724 kb on + strand, within ECD_02787at 2930.724 kb on + strand, within ECD_02787at 2930.735 kb on + strand, within ECD_02787at 2930.735 kb on + strand, within ECD_02787at 2930.736 kb on - strand, within ECD_02787at 2930.772 kb on + strand, within ECD_02787at 2930.772 kb on + strand, within ECD_02787at 2930.773 kb on - strand, within ECD_02787at 2930.773 kb on - strand, within ECD_02787at 2930.777 kb on - strand, within ECD_02787at 2930.779 kb on - strand, within ECD_02787at 2930.845 kb on + strand, within ECD_02787at 2930.846 kb on - strand, within ECD_02787at 2930.846 kb on - strand, within ECD_02787at 2930.846 kb on - strand, within ECD_02787at 2930.858 kb on - strand, within ECD_02787at 2930.876 kb on - strand, within ECD_02787at 2930.904 kb on + strand, within ECD_02787at 2930.904 kb on + strand, within ECD_02787at 2930.904 kb on + strand, within ECD_02787at 2930.905 kb on - strand, within ECD_02787at 2930.905 kb on - strand, within ECD_02787at 2930.905 kb on - strand, within ECD_02787at 2930.909 kb on - strand, within ECD_02787at 2930.927 kb on + strand, within ECD_02787at 2930.928 kb on - strand, within ECD_02787at 2931.017 kb on - strand, within ECD_02787at 2931.040 kb on + strand, within ECD_02787at 2931.041 kb on - strand, within ECD_02787at 2931.042 kb on + strand, within ECD_02787at 2931.043 kb on - strand, within ECD_02787at 2931.043 kb on - strand, within ECD_02787at 2931.070 kb on + strand, within ECD_02787at 2931.070 kb on + strand, within ECD_02787at 2931.070 kb on + strand, within ECD_02787at 2931.141 kb on + strand, within ECD_02787at 2931.142 kb on - strand, within ECD_02787at 2931.142 kb on - strand, within ECD_02787at 2931.142 kb on - strand, within ECD_02787at 2931.265 kb on + strand, within ECD_02787at 2931.357 kb on + strand, within ECD_02787at 2931.448 kb on + strandat 2931.596 kb on + strandat 2931.829 kb on - strand, within ECD_02788at 2931.953 kb on + strand, within ECD_02788at 2931.953 kb on + strand, within ECD_02788at 2931.954 kb on - strand, within ECD_02788at 2931.954 kb on - strand, within ECD_02788at 2931.954 kb on - strand, within ECD_02788at 2931.954 kb on - strand, within ECD_02788at 2931.955 kb on + strand, within ECD_02788at 2931.955 kb on + strand, within ECD_02788at 2931.955 kb on + strand, within ECD_02788at 2932.153 kb on - strand, within ECD_02788at 2932.204 kb on + strand, within ECD_02788at 2932.204 kb on + strand, within ECD_02788at 2932.205 kb on - strand, within ECD_02788at 2932.217 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.219 kb on + strand, within ECD_02788at 2932.220 kb on - strand, within ECD_02788at 2932.220 kb on - strand, within ECD_02788at 2932.391 kb on + strandat 2932.391 kb on + strandat 2932.391 kb on + strandat 2932.392 kb on - strandat 2932.392 kb on - strandat 2932.392 kb on - strandat 2932.392 kb on - strandat 2932.477 kb on + strandat 2932.477 kb on + strandat 2932.478 kb on - strandat 2932.643 kb on + strand, within ECD_02789at 2932.643 kb on + strand, within ECD_02789at 2932.643 kb on + strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.644 kb on - strand, within ECD_02789at 2932.784 kb on + strand, within ECD_02789at 2932.840 kb on - strand, within ECD_02789at 2932.903 kb on - strandat 2932.903 kb on - strandat 2932.922 kb on + strandat 2932.922 kb on + strandat 2932.922 kb on + strandat 2932.923 kb on - strandat 2932.923 kb on - strandat 2932.931 kb on + strandat 2932.932 kb on - strandat 2932.997 kb on + strand, within ECD_02790at 2933.001 kb on + strand, within ECD_02790at 2933.001 kb on + strand, within ECD_02790at 2933.001 kb on + strand, within ECD_02790at 2933.001 kb on + strand, within ECD_02790at 2933.002 kb on - strand, within ECD_02790at 2933.002 kb on - strand, within ECD_02790at 2933.002 kb on - strand, within ECD_02790at 2933.002 kb on - strand, within ECD_02790at 2933.002 kb on - strand, within ECD_02790at 2933.002 kb on - strand, within ECD_02790at 2933.027 kb on - strand, within ECD_02790at 2933.027 kb on - strand, within ECD_02790at 2933.039 kb on - strand, within ECD_02790at 2933.039 kb on - strand, within ECD_02790at 2933.039 kb on - strand, within ECD_02790at 2933.059 kb on + strand, within ECD_02790at 2933.059 kb on + strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.060 kb on - strand, within ECD_02790at 2933.070 kb on + strand, within ECD_02790at 2933.070 kb on + strand, within ECD_02790at 2933.070 kb on + strand, within ECD_02790at 2933.100 kb on - strand, within ECD_02790at 2933.100 kb on - strand, within ECD_02790at 2933.165 kb on - strand, within ECD_02790at 2933.167 kb on + strand, within ECD_02790at 2933.239 kb on + strand, within ECD_02790at 2933.285 kb on + strand, within ECD_02790at 2933.375 kb on - strand, within ECD_02790

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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2,930,680 + ECD_02787 0.22 +0.4
2,930,680 + ECD_02787 0.22 +0.7
2,930,680 + ECD_02787 0.22 +0.7
2,930,681 - ECD_02787 0.22 -0.0
2,930,710 + ECD_02787 0.25 -0.5
2,930,724 + ECD_02787 0.26 -0.3
2,930,724 + ECD_02787 0.26 -0.4
2,930,735 + ECD_02787 0.27 +0.2
2,930,735 + ECD_02787 0.27 +0.3
2,930,736 - ECD_02787 0.27 -1.3
2,930,772 + ECD_02787 0.31 +0.1
2,930,772 + ECD_02787 0.31 -1.1
2,930,773 - ECD_02787 0.31 +0.2
2,930,773 - ECD_02787 0.31 +0.9
2,930,777 - ECD_02787 0.31 +0.0
2,930,779 - ECD_02787 0.31 +0.9
2,930,845 + ECD_02787 0.38 -0.7
2,930,846 - ECD_02787 0.38 -0.3
2,930,846 - ECD_02787 0.38 +1.3
2,930,846 - ECD_02787 0.38 +0.3
2,930,858 - ECD_02787 0.39 -0.3
2,930,876 - ECD_02787 0.41 +0.2
2,930,904 + ECD_02787 0.43 +0.1
2,930,904 + ECD_02787 0.43 +0.8
2,930,904 + ECD_02787 0.43 -1.4
2,930,905 - ECD_02787 0.43 +0.2
2,930,905 - ECD_02787 0.43 +0.3
2,930,905 - ECD_02787 0.43 -0.9
2,930,909 - ECD_02787 0.44 +1.1
2,930,927 + ECD_02787 0.46 +1.0
2,930,928 - ECD_02787 0.46 +0.2
2,931,017 - ECD_02787 0.54 +0.5
2,931,040 + ECD_02787 0.56 +1.1
2,931,041 - ECD_02787 0.56 +0.5
2,931,042 + ECD_02787 0.57 -1.4
2,931,043 - ECD_02787 0.57 +0.7
2,931,043 - ECD_02787 0.57 -0.4
2,931,070 + ECD_02787 0.59 +0.5
2,931,070 + ECD_02787 0.59 +0.9
2,931,070 + ECD_02787 0.59 +0.0
2,931,141 + ECD_02787 0.66 -0.2
2,931,142 - ECD_02787 0.66 +0.8
2,931,142 - ECD_02787 0.66 -1.2
2,931,142 - ECD_02787 0.66 +1.0
2,931,265 + ECD_02787 0.78 +0.5
2,931,357 + ECD_02787 0.87 +0.6
2,931,448 + +0.4
2,931,596 + +1.1
2,931,829 - ECD_02788 0.22 +0.0
2,931,953 + ECD_02788 0.39 +1.0
2,931,953 + ECD_02788 0.39 +0.1
2,931,954 - ECD_02788 0.39 +0.3
2,931,954 - ECD_02788 0.39 +0.6
2,931,954 - ECD_02788 0.39 +0.6
2,931,954 - ECD_02788 0.39 -0.0
2,931,955 + ECD_02788 0.39 +1.1
2,931,955 + ECD_02788 0.39 +0.1
2,931,955 + ECD_02788 0.39 -0.5
2,932,153 - ECD_02788 0.67 +0.6
2,932,204 + ECD_02788 0.74 +0.6
2,932,204 + ECD_02788 0.74 +0.5
2,932,205 - ECD_02788 0.74 -0.1
2,932,217 + ECD_02788 0.76 +0.9
2,932,219 + ECD_02788 0.76 +0.3
2,932,219 + ECD_02788 0.76 -0.8
2,932,219 + ECD_02788 0.76 +1.5
2,932,219 + ECD_02788 0.76 +0.3
2,932,219 + ECD_02788 0.76 +0.1
2,932,219 + ECD_02788 0.76 -0.5
2,932,219 + ECD_02788 0.76 -0.3
2,932,220 - ECD_02788 0.76 +0.8
2,932,220 - ECD_02788 0.76 +0.0
2,932,391 + +0.8
2,932,391 + +0.3
2,932,391 + -0.1
2,932,392 - -0.3
2,932,392 - +0.4
2,932,392 - +0.3
2,932,392 - -0.0
2,932,477 + +0.8
2,932,477 + -0.4
2,932,478 - -0.3
2,932,643 + ECD_02789 0.21 +0.1
2,932,643 + ECD_02789 0.21 +0.0
2,932,643 + ECD_02789 0.21 +0.3
2,932,644 - ECD_02789 0.21 -0.0
2,932,644 - ECD_02789 0.21 +0.5
2,932,644 - ECD_02789 0.21 +0.4
2,932,644 - ECD_02789 0.21 -1.5
2,932,644 - ECD_02789 0.21 -0.6
2,932,644 - ECD_02789 0.21 +0.2
2,932,644 - ECD_02789 0.21 +0.7
2,932,784 + ECD_02789 0.64 +0.5
2,932,840 - ECD_02789 0.81 -0.0
2,932,903 - -0.3
2,932,903 - +0.3
2,932,922 + +0.1
2,932,922 + -1.0
2,932,922 + +0.3
2,932,923 - +0.6
2,932,923 - -0.7
2,932,931 + +0.2
2,932,932 - -0.6
2,932,997 + ECD_02790 0.13 -0.2
2,933,001 + ECD_02790 0.14 +0.4
2,933,001 + ECD_02790 0.14 -1.9
2,933,001 + ECD_02790 0.14 -0.8
2,933,001 + ECD_02790 0.14 +0.0
2,933,002 - ECD_02790 0.14 +0.3
2,933,002 - ECD_02790 0.14 +0.6
2,933,002 - ECD_02790 0.14 -0.5
2,933,002 - ECD_02790 0.14 +0.5
2,933,002 - ECD_02790 0.14 -0.2
2,933,002 - ECD_02790 0.14 +0.1
2,933,027 - ECD_02790 0.17 -0.0
2,933,027 - ECD_02790 0.17 +0.5
2,933,039 - ECD_02790 0.19 -0.3
2,933,039 - ECD_02790 0.19 +0.1
2,933,039 - ECD_02790 0.19 +0.5
2,933,059 + ECD_02790 0.22 +0.1
2,933,059 + ECD_02790 0.22 -2.2
2,933,060 - ECD_02790 0.22 -0.9
2,933,060 - ECD_02790 0.22 +0.2
2,933,060 - ECD_02790 0.22 -0.5
2,933,060 - ECD_02790 0.22 -0.5
2,933,060 - ECD_02790 0.22 +0.7
2,933,060 - ECD_02790 0.22 -0.2
2,933,060 - ECD_02790 0.22 +0.0
2,933,060 - ECD_02790 0.22 +0.5
2,933,060 - ECD_02790 0.22 -0.6
2,933,060 - ECD_02790 0.22 -0.3
2,933,060 - ECD_02790 0.22 -0.0
2,933,060 - ECD_02790 0.22 +0.1
2,933,060 - ECD_02790 0.22 -0.3
2,933,060 - ECD_02790 0.22 -0.1
2,933,060 - ECD_02790 0.22 -0.3
2,933,060 - ECD_02790 0.22 -0.5
2,933,070 + ECD_02790 0.23 -1.3
2,933,070 + ECD_02790 0.23 -0.5
2,933,070 + ECD_02790 0.23 +0.7
2,933,100 - ECD_02790 0.28 -0.2
2,933,100 - ECD_02790 0.28 -0.2
2,933,165 - ECD_02790 0.37 -0.1
2,933,167 + ECD_02790 0.37 +0.7
2,933,239 + ECD_02790 0.47 +0.0
2,933,285 + ECD_02790 0.53 +0.3
2,933,375 - ECD_02790 0.66 -0.0

Or see this region's nucleotide sequence