Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02562 and ECD_02563 are separated by 152 nucleotides ECD_02563 and ECD_02564 are separated by 148 nucleotides
ECD_02562: ECD_02562 - carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein, at 2,675,140 to 2,677,392
_02562
ECD_02563: ECD_02563 - formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit, at 2,677,545 to 2,678,072
_02563
ECD_02564: ECD_02564 - asc operon transcriptional repressor; prpBC operon repressor, at 2,678,221 to 2,679,234
_02564
Position (kb)
2677
2678
2679 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2676.548 kb on + strand, within ECD_02562 at 2676.549 kb on - strand, within ECD_02562 at 2676.549 kb on - strand, within ECD_02562 at 2676.549 kb on - strand, within ECD_02562 at 2676.588 kb on + strand, within ECD_02562 at 2676.589 kb on - strand, within ECD_02562 at 2676.589 kb on - strand, within ECD_02562 at 2676.589 kb on - strand, within ECD_02562 at 2676.699 kb on + strand, within ECD_02562 at 2676.699 kb on + strand, within ECD_02562 at 2676.699 kb on + strand, within ECD_02562 at 2676.700 kb on - strand, within ECD_02562 at 2676.763 kb on + strand, within ECD_02562 at 2676.764 kb on - strand, within ECD_02562 at 2676.820 kb on + strand, within ECD_02562 at 2676.820 kb on + strand, within ECD_02562 at 2676.820 kb on + strand, within ECD_02562 at 2676.820 kb on + strand, within ECD_02562 at 2676.821 kb on - strand, within ECD_02562 at 2676.897 kb on - strand, within ECD_02562 at 2676.937 kb on + strand, within ECD_02562 at 2676.999 kb on + strand, within ECD_02562 at 2677.000 kb on - strand, within ECD_02562 at 2677.041 kb on + strand, within ECD_02562 at 2677.071 kb on + strand, within ECD_02562 at 2677.124 kb on - strand, within ECD_02562 at 2677.124 kb on - strand, within ECD_02562 at 2677.125 kb on + strand, within ECD_02562 at 2677.125 kb on + strand, within ECD_02562 at 2677.125 kb on + strand, within ECD_02562 at 2677.126 kb on - strand, within ECD_02562 at 2677.155 kb on + strand, within ECD_02562 at 2677.183 kb on - strand at 2677.208 kb on + strand at 2677.256 kb on - strand at 2677.294 kb on + strand at 2677.295 kb on - strand at 2677.295 kb on - strand at 2677.495 kb on - strand at 2677.495 kb on - strand at 2677.501 kb on - strand at 2677.547 kb on - strand at 2677.601 kb on + strand, within ECD_02563 at 2677.686 kb on - strand, within ECD_02563 at 2677.688 kb on - strand, within ECD_02563 at 2677.711 kb on - strand, within ECD_02563 at 2677.711 kb on - strand, within ECD_02563 at 2677.749 kb on + strand, within ECD_02563 at 2677.750 kb on - strand, within ECD_02563 at 2677.750 kb on - strand, within ECD_02563 at 2677.772 kb on - strand, within ECD_02563 at 2677.772 kb on - strand, within ECD_02563 at 2677.772 kb on - strand, within ECD_02563 at 2677.850 kb on + strand, within ECD_02563 at 2677.851 kb on - strand, within ECD_02563 at 2677.932 kb on - strand, within ECD_02563 at 2677.951 kb on - strand, within ECD_02563 at 2678.042 kb on + strand at 2678.043 kb on - strand at 2678.043 kb on - strand at 2678.043 kb on - strand at 2678.096 kb on - strand at 2678.096 kb on - strand at 2678.394 kb on + strand, within ECD_02564 at 2678.400 kb on + strand, within ECD_02564 at 2678.455 kb on + strand, within ECD_02564 at 2678.456 kb on - strand, within ECD_02564 at 2678.473 kb on + strand, within ECD_02564 at 2678.474 kb on - strand, within ECD_02564 at 2678.474 kb on - strand, within ECD_02564 at 2678.474 kb on - strand, within ECD_02564 at 2678.482 kb on - strand, within ECD_02564 at 2678.491 kb on - strand, within ECD_02564 at 2678.501 kb on - strand, within ECD_02564 at 2678.540 kb on - strand, within ECD_02564 at 2678.540 kb on - strand, within ECD_02564 at 2678.572 kb on - strand, within ECD_02564 at 2678.605 kb on - strand, within ECD_02564 at 2678.605 kb on - strand, within ECD_02564 at 2678.605 kb on - strand, within ECD_02564 at 2678.629 kb on - strand, within ECD_02564 at 2678.629 kb on - strand, within ECD_02564 at 2678.728 kb on - strand, within ECD_02564 at 2678.742 kb on + strand, within ECD_02564 at 2678.743 kb on - strand, within ECD_02564 at 2678.791 kb on - strand, within ECD_02564 at 2678.849 kb on - strand, within ECD_02564 at 2678.868 kb on + strand, within ECD_02564 at 2678.934 kb on + strand, within ECD_02564 at 2678.948 kb on - strand, within ECD_02564 at 2678.996 kb on - strand, within ECD_02564 at 2679.008 kb on + strand, within ECD_02564 at 2679.009 kb on - strand, within ECD_02564 at 2679.020 kb on + strand, within ECD_02564 at 2679.020 kb on + strand, within ECD_02564 at 2679.020 kb on + strand, within ECD_02564 at 2679.058 kb on - strand, within ECD_02564
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,676,548 + ECD_02562 0.62 -0.3 2,676,549 - ECD_02562 0.63 -0.3 2,676,549 - ECD_02562 0.63 -0.1 2,676,549 - ECD_02562 0.63 +0.1 2,676,588 + ECD_02562 0.64 -0.8 2,676,589 - ECD_02562 0.64 +1.0 2,676,589 - ECD_02562 0.64 -0.1 2,676,589 - ECD_02562 0.64 +0.1 2,676,699 + ECD_02562 0.69 -0.3 2,676,699 + ECD_02562 0.69 -0.4 2,676,699 + ECD_02562 0.69 -1.3 2,676,700 - ECD_02562 0.69 +0.4 2,676,763 + ECD_02562 0.72 -0.5 2,676,764 - ECD_02562 0.72 +0.8 2,676,820 + ECD_02562 0.75 +0.3 2,676,820 + ECD_02562 0.75 -0.1 2,676,820 + ECD_02562 0.75 +0.2 2,676,820 + ECD_02562 0.75 -1.5 2,676,821 - ECD_02562 0.75 +0.6 2,676,897 - ECD_02562 0.78 +1.8 2,676,937 + ECD_02562 0.80 +0.1 2,676,999 + ECD_02562 0.83 +0.3 2,677,000 - ECD_02562 0.83 +0.8 2,677,041 + ECD_02562 0.84 -1.7 2,677,071 + ECD_02562 0.86 +0.8 2,677,124 - ECD_02562 0.88 +0.0 2,677,124 - ECD_02562 0.88 -1.1 2,677,125 + ECD_02562 0.88 +1.1 2,677,125 + ECD_02562 0.88 -2.1 2,677,125 + ECD_02562 0.88 +1.1 2,677,126 - ECD_02562 0.88 +0.6 2,677,155 + ECD_02562 0.89 +0.4 2,677,183 - +0.8 2,677,208 + +0.5 2,677,256 - -2.0 2,677,294 + -0.2 2,677,295 - +0.2 2,677,295 - -1.1 2,677,495 - +0.6 2,677,495 - +0.9 2,677,501 - +0.0 2,677,547 - -1.3 2,677,601 + ECD_02563 0.11 -0.7 2,677,686 - ECD_02563 0.27 -0.1 2,677,688 - ECD_02563 0.27 +0.1 2,677,711 - ECD_02563 0.31 +0.6 2,677,711 - ECD_02563 0.31 -0.6 2,677,749 + ECD_02563 0.39 -0.2 2,677,750 - ECD_02563 0.39 -0.3 2,677,750 - ECD_02563 0.39 -2.5 2,677,772 - ECD_02563 0.43 +0.2 2,677,772 - ECD_02563 0.43 -0.7 2,677,772 - ECD_02563 0.43 -0.9 2,677,850 + ECD_02563 0.58 +0.4 2,677,851 - ECD_02563 0.58 +0.4 2,677,932 - ECD_02563 0.73 +0.1 2,677,951 - ECD_02563 0.77 +0.7 2,678,042 + -0.6 2,678,043 - -0.2 2,678,043 - +3.2 2,678,043 - +0.1 2,678,096 - -1.3 2,678,096 - +0.7 2,678,394 + ECD_02564 0.17 +0.4 2,678,400 + ECD_02564 0.18 -0.6 2,678,455 + ECD_02564 0.23 +0.4 2,678,456 - ECD_02564 0.23 +0.1 2,678,473 + ECD_02564 0.25 +0.1 2,678,474 - ECD_02564 0.25 -0.3 2,678,474 - ECD_02564 0.25 +0.1 2,678,474 - ECD_02564 0.25 +1.5 2,678,482 - ECD_02564 0.26 -0.5 2,678,491 - ECD_02564 0.27 +1.0 2,678,501 - ECD_02564 0.28 +1.2 2,678,540 - ECD_02564 0.31 -0.2 2,678,540 - ECD_02564 0.31 -2.1 2,678,572 - ECD_02564 0.35 +0.1 2,678,605 - ECD_02564 0.38 +1.0 2,678,605 - ECD_02564 0.38 +0.1 2,678,605 - ECD_02564 0.38 -0.8 2,678,629 - ECD_02564 0.40 +1.0 2,678,629 - ECD_02564 0.40 +0.2 2,678,728 - ECD_02564 0.50 -0.7 2,678,742 + ECD_02564 0.51 +0.8 2,678,743 - ECD_02564 0.51 +0.6 2,678,791 - ECD_02564 0.56 -0.2 2,678,849 - ECD_02564 0.62 -0.2 2,678,868 + ECD_02564 0.64 +1.3 2,678,934 + ECD_02564 0.70 +0.1 2,678,948 - ECD_02564 0.72 -0.1 2,678,996 - ECD_02564 0.76 +0.2 2,679,008 + ECD_02564 0.78 +0.5 2,679,009 - ECD_02564 0.78 +0.1 2,679,020 + ECD_02564 0.79 -0.5 2,679,020 + ECD_02564 0.79 +0.2 2,679,020 + ECD_02564 0.79 +0.4 2,679,058 - ECD_02564 0.83 -0.9
Or see this region's nucleotide sequence