Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02301 and ECD_02302 are separated by 335 nucleotides ECD_02302 and ECD_02303 are separated by 49 nucleotides
ECD_02301: ECD_02301 - manganese/divalent cation transporter, at 2,389,354 to 2,390,592
_02301
ECD_02302: ECD_02302 - nucleoside (except guanosine) transporter, at 2,390,928 to 2,392,130
_02302
ECD_02303: ECD_02303 - putative diguanylate cyclase, at 2,392,180 to 2,394,369
_02303
Position (kb)
2390
2391
2392
2393 Strain fitness (log2 ratio)
-2
-1
0
1 at 2389.953 kb on - strand, within ECD_02301 at 2390.091 kb on - strand, within ECD_02301 at 2390.568 kb on + strand at 2390.568 kb on + strand at 2390.604 kb on - strand at 2390.664 kb on + strand at 2390.701 kb on + strand at 2390.707 kb on + strand at 2390.790 kb on - strand at 2390.883 kb on + strand at 2390.883 kb on + strand at 2390.928 kb on - strand at 2391.389 kb on + strand, within ECD_02302 at 2391.422 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.480 kb on + strand, within ECD_02302 at 2391.480 kb on + strand, within ECD_02302 at 2391.480 kb on + strand, within ECD_02302 at 2391.481 kb on - strand, within ECD_02302 at 2391.652 kb on - strand, within ECD_02302 at 2391.795 kb on + strand, within ECD_02302 at 2391.860 kb on + strand, within ECD_02302 at 2392.040 kb on + strand at 2392.137 kb on - strand at 2392.137 kb on - strand at 2392.137 kb on - strand at 2392.137 kb on - strand at 2392.137 kb on - strand at 2392.137 kb on - strand at 2392.215 kb on - strand at 2392.215 kb on - strand at 2392.321 kb on - strand at 2392.477 kb on - strand, within ECD_02303 at 2392.497 kb on - strand, within ECD_02303 at 2392.891 kb on - strand, within ECD_02303 at 2392.891 kb on - strand, within ECD_02303
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,389,953 - ECD_02301 0.48 -1.8 2,390,091 - ECD_02301 0.59 -0.4 2,390,568 + -0.9 2,390,568 + +0.7 2,390,604 - -0.4 2,390,664 + +0.1 2,390,701 + +0.1 2,390,707 + +0.1 2,390,790 - -0.0 2,390,883 + +0.4 2,390,883 + +0.6 2,390,928 - +0.4 2,391,389 + ECD_02302 0.38 -1.2 2,391,422 + ECD_02302 0.41 +0.5 2,391,461 + ECD_02302 0.44 -0.0 2,391,461 + ECD_02302 0.44 +0.2 2,391,461 + ECD_02302 0.44 -0.8 2,391,461 + ECD_02302 0.44 -0.6 2,391,461 + ECD_02302 0.44 -1.1 2,391,480 + ECD_02302 0.46 -1.1 2,391,480 + ECD_02302 0.46 +0.4 2,391,480 + ECD_02302 0.46 -1.8 2,391,481 - ECD_02302 0.46 -0.8 2,391,652 - ECD_02302 0.60 -1.6 2,391,795 + ECD_02302 0.72 +1.2 2,391,860 + ECD_02302 0.77 -1.6 2,392,040 + +1.1 2,392,137 - +1.5 2,392,137 - -1.2 2,392,137 - +0.5 2,392,137 - +1.1 2,392,137 - +1.5 2,392,137 - +0.4 2,392,215 - -0.2 2,392,215 - +0.1 2,392,321 - +0.2 2,392,477 - ECD_02303 0.14 -0.1 2,392,497 - ECD_02303 0.14 +0.1 2,392,891 - ECD_02303 0.32 +0.1 2,392,891 - ECD_02303 0.32 +0.1
Or see this region's nucleotide sequence