Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02167 and ECD_02168 overlap by 11 nucleotides ECD_02168 and ECD_02169 overlap by 4 nucleotides
ECD_02167: ECD_02167 - anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit, at 2,243,016 to 2,244,644
_02167
ECD_02168: ECD_02168 - anaerobic sn-glycerol-3-phosphate dehydrogenase membrane anchor subunit, at 2,244,634 to 2,245,893
_02168
ECD_02169: ECD_02169 - anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster, at 2,245,890 to 2,247,080
_02169
Position (kb)
2244
2245
2246 Strain fitness (log2 ratio)
-1
0
1
2 at 2243.781 kb on - strand, within ECD_02167 at 2243.827 kb on + strand, within ECD_02167 at 2243.831 kb on + strand, within ECD_02167 at 2244.313 kb on + strand, within ECD_02167 at 2244.314 kb on - strand, within ECD_02167 at 2244.314 kb on - strand, within ECD_02167 at 2244.597 kb on + strand at 2244.654 kb on + strand at 2245.050 kb on - strand, within ECD_02168 at 2245.244 kb on + strand, within ECD_02168 at 2245.244 kb on + strand, within ECD_02168 at 2245.257 kb on + strand, within ECD_02168 at 2245.257 kb on + strand, within ECD_02168 at 2245.350 kb on - strand, within ECD_02168 at 2245.666 kb on + strand, within ECD_02168 at 2245.666 kb on + strand, within ECD_02168 at 2245.666 kb on + strand, within ECD_02168 at 2245.667 kb on - strand, within ECD_02168 at 2245.668 kb on + strand, within ECD_02168 at 2245.919 kb on + strand at 2245.919 kb on + strand at 2246.345 kb on - strand, within ECD_02169 at 2246.364 kb on + strand, within ECD_02169 at 2246.364 kb on + strand, within ECD_02169 at 2246.365 kb on - strand, within ECD_02169 at 2246.366 kb on + strand, within ECD_02169 at 2246.367 kb on - strand, within ECD_02169 at 2246.407 kb on - strand, within ECD_02169 at 2246.584 kb on + strand, within ECD_02169
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,243,781 - ECD_02167 0.47 +0.9 2,243,827 + ECD_02167 0.50 +0.7 2,243,831 + ECD_02167 0.50 -1.0 2,244,313 + ECD_02167 0.80 -1.4 2,244,314 - ECD_02167 0.80 -0.7 2,244,314 - ECD_02167 0.80 +0.6 2,244,597 + -0.3 2,244,654 + -0.7 2,245,050 - ECD_02168 0.33 +0.3 2,245,244 + ECD_02168 0.48 +0.6 2,245,244 + ECD_02168 0.48 -0.0 2,245,257 + ECD_02168 0.49 -1.2 2,245,257 + ECD_02168 0.49 -0.3 2,245,350 - ECD_02168 0.57 -0.9 2,245,666 + ECD_02168 0.82 +0.0 2,245,666 + ECD_02168 0.82 -0.8 2,245,666 + ECD_02168 0.82 -0.4 2,245,667 - ECD_02168 0.82 -0.9 2,245,668 + ECD_02168 0.82 +0.4 2,245,919 + +0.6 2,245,919 + +1.4 2,246,345 - ECD_02169 0.38 +1.8 2,246,364 + ECD_02169 0.40 +0.3 2,246,364 + ECD_02169 0.40 +0.1 2,246,365 - ECD_02169 0.40 +1.0 2,246,366 + ECD_02169 0.40 -0.0 2,246,367 - ECD_02169 0.40 -0.3 2,246,407 - ECD_02169 0.43 +0.8 2,246,584 + ECD_02169 0.58 -0.3
Or see this region's nucleotide sequence