Strain Fitness in Escherichia coli BL21 around ECD_02076

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02075 and ECD_02076 overlap by 7 nucleotidesECD_02076 and ECD_02077 are separated by 242 nucleotides ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175 _02075 ECD_02076: ECD_02076 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit C, at 2,130,169 to 2,131,404 _02076 ECD_02077: ECD_02077 - methyl-galactoside transporter subunit, at 2,131,647 to 2,132,657 _02077 Position (kb) 2130 2131 2132Strain fitness (log2 ratio) -1 0 1at 2129.706 kb on + strand, within ECD_02075at 2129.800 kb on - strand, within ECD_02075at 2129.800 kb on - strand, within ECD_02075at 2129.916 kb on + strand, within ECD_02075at 2129.916 kb on + strand, within ECD_02075at 2129.916 kb on + strand, within ECD_02075at 2129.985 kb on + strand, within ECD_02075at 2130.150 kb on - strandat 2130.643 kb on + strand, within ECD_02076at 2130.801 kb on + strand, within ECD_02076at 2131.695 kb on - strandat 2131.872 kb on - strand, within ECD_02077at 2132.093 kb on - strand, within ECD_02077at 2132.105 kb on - strand, within ECD_02077at 2132.150 kb on + strand, within ECD_02077at 2132.151 kb on - strand, within ECD_02077

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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2,129,706 + ECD_02075 0.62 -1.5
2,129,800 - ECD_02075 0.70 -0.2
2,129,800 - ECD_02075 0.70 +1.3
2,129,916 + ECD_02075 0.79 +0.8
2,129,916 + ECD_02075 0.79 +1.5
2,129,916 + ECD_02075 0.79 +0.4
2,129,985 + ECD_02075 0.85 -0.3
2,130,150 - -0.5
2,130,643 + ECD_02076 0.38 +0.1
2,130,801 + ECD_02076 0.51 -1.7
2,131,695 - +0.0
2,131,872 - ECD_02077 0.22 +1.0
2,132,093 - ECD_02077 0.44 -0.2
2,132,105 - ECD_02077 0.45 +1.1
2,132,150 + ECD_02077 0.50 -0.8
2,132,151 - ECD_02077 0.50 +0.6

Or see this region's nucleotide sequence