Strain Fitness in Escherichia coli BL21 around ECD_02066

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02064 and ECD_02065 are separated by 173 nucleotidesECD_02065 and ECD_02066 are separated by 169 nucleotidesECD_02066 and ECD_02067 are separated by 129 nucleotidesECD_02067 and ECD_02068 are separated by 52 nucleotides ECD_02064: ECD_02064 - D-alanyl-D-alanine endopeptidase, at 2,118,842 to 2,119,774 _02064 ECD_02065: ECD_02065 - Yip1 family inner membrane protein, at 2,119,948 to 2,120,535 _02065 ECD_02066: ECD_02066 - DedA family inner membrane protein, at 2,120,705 to 2,121,283 _02066 ECD_02067: ECD_02067 - putative oxidoreductase, at 2,121,413 to 2,122,174 _02067 ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591 _02068 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -1 0 1at 2119.833 kb on + strandat 2119.834 kb on - strandat 2119.950 kb on - strandat 2119.978 kb on + strandat 2119.978 kb on + strandat 2119.978 kb on + strandat 2120.037 kb on + strand, within ECD_02065at 2120.038 kb on - strand, within ECD_02065at 2120.046 kb on + strand, within ECD_02065at 2120.047 kb on - strand, within ECD_02065at 2120.094 kb on - strand, within ECD_02065at 2120.111 kb on + strand, within ECD_02065at 2120.160 kb on - strand, within ECD_02065at 2120.578 kb on - strandat 2120.578 kb on - strandat 2120.579 kb on + strandat 2120.580 kb on - strandat 2120.704 kb on + strandat 2120.716 kb on + strandat 2120.717 kb on - strandat 2120.722 kb on + strandat 2120.722 kb on + strandat 2120.723 kb on - strandat 2120.916 kb on + strand, within ECD_02066at 2121.008 kb on - strand, within ECD_02066at 2121.011 kb on + strand, within ECD_02066at 2121.011 kb on + strand, within ECD_02066at 2121.718 kb on - strand, within ECD_02067at 2121.753 kb on - strand, within ECD_02067at 2122.031 kb on - strand, within ECD_02067at 2122.031 kb on - strand, within ECD_02067at 2122.085 kb on - strand, within ECD_02067at 2122.205 kb on + strandat 2122.205 kb on + strandat 2122.210 kb on - strandat 2122.212 kb on - strandat 2122.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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2,119,833 + +0.9
2,119,834 - +0.0
2,119,950 - +0.7
2,119,978 + -0.1
2,119,978 + -0.0
2,119,978 + -0.7
2,120,037 + ECD_02065 0.15 -0.0
2,120,038 - ECD_02065 0.15 +0.2
2,120,046 + ECD_02065 0.17 +1.3
2,120,047 - ECD_02065 0.17 -0.5
2,120,094 - ECD_02065 0.25 -1.0
2,120,111 + ECD_02065 0.28 +0.6
2,120,160 - ECD_02065 0.36 +1.3
2,120,578 - +0.9
2,120,578 - -0.0
2,120,579 + -0.1
2,120,580 - +0.6
2,120,704 + +0.6
2,120,716 + -0.7
2,120,717 - -1.4
2,120,722 + +0.1
2,120,722 + -1.6
2,120,723 - -0.1
2,120,916 + ECD_02066 0.36 -0.9
2,121,008 - ECD_02066 0.52 -0.1
2,121,011 + ECD_02066 0.53 -0.9
2,121,011 + ECD_02066 0.53 -0.3
2,121,718 - ECD_02067 0.40 -0.5
2,121,753 - ECD_02067 0.45 -0.8
2,122,031 - ECD_02067 0.81 -1.6
2,122,031 - ECD_02067 0.81 +0.4
2,122,085 - ECD_02067 0.88 +0.3
2,122,205 + -0.3
2,122,205 + -0.7
2,122,210 - -0.1
2,122,212 - -0.1
2,122,212 - +0.4

Or see this region's nucleotide sequence