Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02064 and ECD_02065 are separated by 173 nucleotides ECD_02065 and ECD_02066 are separated by 169 nucleotides ECD_02066 and ECD_02067 are separated by 129 nucleotides ECD_02067 and ECD_02068 are separated by 52 nucleotides
ECD_02064: ECD_02064 - D-alanyl-D-alanine endopeptidase, at 2,118,842 to 2,119,774
_02064
ECD_02065: ECD_02065 - Yip1 family inner membrane protein, at 2,119,948 to 2,120,535
_02065
ECD_02066: ECD_02066 - DedA family inner membrane protein, at 2,120,705 to 2,121,283
_02066
ECD_02067: ECD_02067 - putative oxidoreductase, at 2,121,413 to 2,122,174
_02067
ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591
_02068
Position (kb)
2120
2121
2122 Strain fitness (log2 ratio)
-1
0
1 at 2119.833 kb on + strand at 2119.834 kb on - strand at 2119.950 kb on - strand at 2119.978 kb on + strand at 2119.978 kb on + strand at 2119.978 kb on + strand at 2120.037 kb on + strand, within ECD_02065 at 2120.038 kb on - strand, within ECD_02065 at 2120.046 kb on + strand, within ECD_02065 at 2120.047 kb on - strand, within ECD_02065 at 2120.094 kb on - strand, within ECD_02065 at 2120.111 kb on + strand, within ECD_02065 at 2120.160 kb on - strand, within ECD_02065 at 2120.578 kb on - strand at 2120.578 kb on - strand at 2120.579 kb on + strand at 2120.580 kb on - strand at 2120.704 kb on + strand at 2120.716 kb on + strand at 2120.717 kb on - strand at 2120.722 kb on + strand at 2120.722 kb on + strand at 2120.723 kb on - strand at 2120.916 kb on + strand, within ECD_02066 at 2121.008 kb on - strand, within ECD_02066 at 2121.011 kb on + strand, within ECD_02066 at 2121.011 kb on + strand, within ECD_02066 at 2121.718 kb on - strand, within ECD_02067 at 2121.753 kb on - strand, within ECD_02067 at 2122.031 kb on - strand, within ECD_02067 at 2122.031 kb on - strand, within ECD_02067 at 2122.085 kb on - strand, within ECD_02067 at 2122.205 kb on + strand at 2122.205 kb on + strand at 2122.210 kb on - strand at 2122.212 kb on - strand at 2122.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,119,833 + +0.9 2,119,834 - +0.0 2,119,950 - +0.7 2,119,978 + -0.1 2,119,978 + -0.0 2,119,978 + -0.7 2,120,037 + ECD_02065 0.15 -0.0 2,120,038 - ECD_02065 0.15 +0.2 2,120,046 + ECD_02065 0.17 +1.3 2,120,047 - ECD_02065 0.17 -0.5 2,120,094 - ECD_02065 0.25 -1.0 2,120,111 + ECD_02065 0.28 +0.6 2,120,160 - ECD_02065 0.36 +1.3 2,120,578 - +0.9 2,120,578 - -0.0 2,120,579 + -0.1 2,120,580 - +0.6 2,120,704 + +0.6 2,120,716 + -0.7 2,120,717 - -1.4 2,120,722 + +0.1 2,120,722 + -1.6 2,120,723 - -0.1 2,120,916 + ECD_02066 0.36 -0.9 2,121,008 - ECD_02066 0.52 -0.1 2,121,011 + ECD_02066 0.53 -0.9 2,121,011 + ECD_02066 0.53 -0.3 2,121,718 - ECD_02067 0.40 -0.5 2,121,753 - ECD_02067 0.45 -0.8 2,122,031 - ECD_02067 0.81 -1.6 2,122,031 - ECD_02067 0.81 +0.4 2,122,085 - ECD_02067 0.88 +0.3 2,122,205 + -0.3 2,122,205 + -0.7 2,122,210 - -0.1 2,122,212 - -0.1 2,122,212 - +0.4
Or see this region's nucleotide sequence