Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02060 and ECD_02061 are separated by 6 nucleotides ECD_02061 and ECD_02062 are separated by 251 nucleotides
ECD_02060: ECD_02060 - putative ABC transporter permease, at 2,112,263 to 2,113,420
_02060
ECD_02061: ECD_02061 - putative ABC transporter periplasmic binding protein, at 2,113,427 to 2,114,344
_02061
ECD_02062: ECD_02062 - beta-D-glucoside glucohydrolase, periplasmic, at 2,114,596 to 2,116,893
_02062
Position (kb)
2113
2114
2115 Strain fitness (log2 ratio)
-1
0
1 at 2112.445 kb on + strand, within ECD_02060 at 2112.446 kb on - strand, within ECD_02060 at 2112.488 kb on + strand, within ECD_02060 at 2112.596 kb on + strand, within ECD_02060 at 2112.628 kb on - strand, within ECD_02060 at 2112.672 kb on - strand, within ECD_02060 at 2113.173 kb on - strand, within ECD_02060 at 2113.455 kb on + strand at 2113.617 kb on + strand, within ECD_02061 at 2113.618 kb on - strand, within ECD_02061 at 2113.964 kb on - strand, within ECD_02061 at 2114.398 kb on - strand at 2114.451 kb on + strand at 2114.452 kb on - strand at 2114.459 kb on + strand at 2114.469 kb on - strand at 2114.678 kb on + strand at 2114.952 kb on - strand, within ECD_02062 at 2114.952 kb on - strand, within ECD_02062 at 2114.952 kb on - strand, within ECD_02062 at 2115.038 kb on + strand, within ECD_02062 at 2115.066 kb on - strand, within ECD_02062 at 2115.129 kb on - strand, within ECD_02062
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 2,112,445 + ECD_02060 0.16 -0.9 2,112,446 - ECD_02060 0.16 -0.5 2,112,488 + ECD_02060 0.19 +0.4 2,112,596 + ECD_02060 0.29 +0.5 2,112,628 - ECD_02060 0.32 -0.1 2,112,672 - ECD_02060 0.35 +0.5 2,113,173 - ECD_02060 0.79 -0.1 2,113,455 + +0.5 2,113,617 + ECD_02061 0.21 +1.1 2,113,618 - ECD_02061 0.21 -0.9 2,113,964 - ECD_02061 0.58 +0.5 2,114,398 - +0.6 2,114,451 + +0.4 2,114,452 - +0.3 2,114,459 + -0.0 2,114,469 - +0.3 2,114,678 + +0.3 2,114,952 - ECD_02062 0.15 +0.3 2,114,952 - ECD_02062 0.15 -0.1 2,114,952 - ECD_02062 0.15 +0.3 2,115,038 + ECD_02062 0.19 +1.0 2,115,066 - ECD_02062 0.20 -1.4 2,115,129 - ECD_02062 0.23 -1.6
Or see this region's nucleotide sequence