Strain Fitness in Escherichia coli BL21 around ECD_02061

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02060 and ECD_02061 are separated by 6 nucleotidesECD_02061 and ECD_02062 are separated by 251 nucleotides ECD_02060: ECD_02060 - putative ABC transporter permease, at 2,112,263 to 2,113,420 _02060 ECD_02061: ECD_02061 - putative ABC transporter periplasmic binding protein, at 2,113,427 to 2,114,344 _02061 ECD_02062: ECD_02062 - beta-D-glucoside glucohydrolase, periplasmic, at 2,114,596 to 2,116,893 _02062 Position (kb) 2113 2114 2115Strain fitness (log2 ratio) -1 0 1at 2112.445 kb on + strand, within ECD_02060at 2112.446 kb on - strand, within ECD_02060at 2112.488 kb on + strand, within ECD_02060at 2112.596 kb on + strand, within ECD_02060at 2112.628 kb on - strand, within ECD_02060at 2112.672 kb on - strand, within ECD_02060at 2113.173 kb on - strand, within ECD_02060at 2113.455 kb on + strandat 2113.617 kb on + strand, within ECD_02061at 2113.618 kb on - strand, within ECD_02061at 2113.964 kb on - strand, within ECD_02061at 2114.398 kb on - strandat 2114.451 kb on + strandat 2114.452 kb on - strandat 2114.459 kb on + strandat 2114.469 kb on - strandat 2114.678 kb on + strandat 2114.952 kb on - strand, within ECD_02062at 2114.952 kb on - strand, within ECD_02062at 2114.952 kb on - strand, within ECD_02062at 2115.038 kb on + strand, within ECD_02062at 2115.066 kb on - strand, within ECD_02062at 2115.129 kb on - strand, within ECD_02062

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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2,112,445 + ECD_02060 0.16 -0.9
2,112,446 - ECD_02060 0.16 -0.5
2,112,488 + ECD_02060 0.19 +0.4
2,112,596 + ECD_02060 0.29 +0.5
2,112,628 - ECD_02060 0.32 -0.1
2,112,672 - ECD_02060 0.35 +0.5
2,113,173 - ECD_02060 0.79 -0.1
2,113,455 + +0.5
2,113,617 + ECD_02061 0.21 +1.1
2,113,618 - ECD_02061 0.21 -0.9
2,113,964 - ECD_02061 0.58 +0.5
2,114,398 - +0.6
2,114,451 + +0.4
2,114,452 - +0.3
2,114,459 + -0.0
2,114,469 - +0.3
2,114,678 + +0.3
2,114,952 - ECD_02062 0.15 +0.3
2,114,952 - ECD_02062 0.15 -0.1
2,114,952 - ECD_02062 0.15 +0.3
2,115,038 + ECD_02062 0.19 +1.0
2,115,066 - ECD_02062 0.20 -1.4
2,115,129 - ECD_02062 0.23 -1.6

Or see this region's nucleotide sequence