Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01857 and ECD_01858 are separated by 144 nucleotides ECD_01858 and ECD_01859 are separated by 20 nucleotides ECD_01859 and ECD_01860 are separated by 4 nucleotides ECD_01860 and ECD_01861 overlap by 4 nucleotides
ECD_01857: ECD_01857 - methyl-accepting chemotaxis protein II, at 1,916,948 to 1,918,609
_01857
ECD_01858: ECD_01858 - purine-binding chemotaxis protein, at 1,918,754 to 1,919,257
_01858
ECD_01859: ECD_01859 - fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein, at 1,919,278 to 1,921,242
_01859
ECD_01860: ECD_01860 - protein that enables flagellar motor rotation, at 1,921,247 to 1,922,173
_01860
ECD_01861: ECD_01861 - proton conductor component of flagella motor, at 1,922,170 to 1,923,057
_01861
Position (kb)
1919
1920
1921
1922 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1918.434 kb on - strand, within ECD_01857 at 1918.998 kb on - strand, within ECD_01858 at 1919.298 kb on + strand at 1919.802 kb on + strand, within ECD_01859 at 1920.165 kb on + strand, within ECD_01859 at 1920.166 kb on - strand, within ECD_01859 at 1920.244 kb on - strand, within ECD_01859 at 1920.859 kb on + strand, within ECD_01859 at 1920.890 kb on + strand, within ECD_01859 at 1920.982 kb on - strand, within ECD_01859 at 1921.228 kb on + strand at 1921.467 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.550 kb on - strand, within ECD_01860 at 1921.661 kb on - strand, within ECD_01860 at 1921.727 kb on - strand, within ECD_01860 at 1921.906 kb on - strand, within ECD_01860
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 1,918,434 - ECD_01857 0.89 -0.2 1,918,998 - ECD_01858 0.48 -0.2 1,919,298 + +1.9 1,919,802 + ECD_01859 0.27 -0.4 1,920,165 + ECD_01859 0.45 +0.2 1,920,166 - ECD_01859 0.45 -0.3 1,920,244 - ECD_01859 0.49 -1.3 1,920,859 + ECD_01859 0.80 -0.9 1,920,890 + ECD_01859 0.82 -1.0 1,920,982 - ECD_01859 0.87 +0.4 1,921,228 + +0.6 1,921,467 - ECD_01860 0.24 +0.7 1,921,550 - ECD_01860 0.33 +0.0 1,921,550 - ECD_01860 0.33 -0.4 1,921,550 - ECD_01860 0.33 -0.3 1,921,550 - ECD_01860 0.33 -2.2 1,921,661 - ECD_01860 0.45 +1.8 1,921,727 - ECD_01860 0.52 -1.7 1,921,906 - ECD_01860 0.71 +0.2
Or see this region's nucleotide sequence