Strain Fitness in Escherichia coli BL21 around ECD_01859

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01857 and ECD_01858 are separated by 144 nucleotidesECD_01858 and ECD_01859 are separated by 20 nucleotidesECD_01859 and ECD_01860 are separated by 4 nucleotidesECD_01860 and ECD_01861 overlap by 4 nucleotides ECD_01857: ECD_01857 - methyl-accepting chemotaxis protein II, at 1,916,948 to 1,918,609 _01857 ECD_01858: ECD_01858 - purine-binding chemotaxis protein, at 1,918,754 to 1,919,257 _01858 ECD_01859: ECD_01859 - fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein, at 1,919,278 to 1,921,242 _01859 ECD_01860: ECD_01860 - protein that enables flagellar motor rotation, at 1,921,247 to 1,922,173 _01860 ECD_01861: ECD_01861 - proton conductor component of flagella motor, at 1,922,170 to 1,923,057 _01861 Position (kb) 1919 1920 1921 1922Strain fitness (log2 ratio) -2 -1 0 1 2at 1918.434 kb on - strand, within ECD_01857at 1918.998 kb on - strand, within ECD_01858at 1919.298 kb on + strandat 1919.802 kb on + strand, within ECD_01859at 1920.165 kb on + strand, within ECD_01859at 1920.166 kb on - strand, within ECD_01859at 1920.244 kb on - strand, within ECD_01859at 1920.859 kb on + strand, within ECD_01859at 1920.890 kb on + strand, within ECD_01859at 1920.982 kb on - strand, within ECD_01859at 1921.228 kb on + strandat 1921.467 kb on - strand, within ECD_01860at 1921.550 kb on - strand, within ECD_01860at 1921.550 kb on - strand, within ECD_01860at 1921.550 kb on - strand, within ECD_01860at 1921.550 kb on - strand, within ECD_01860at 1921.661 kb on - strand, within ECD_01860at 1921.727 kb on - strand, within ECD_01860at 1921.906 kb on - strand, within ECD_01860

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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1,918,434 - ECD_01857 0.89 -0.2
1,918,998 - ECD_01858 0.48 -0.2
1,919,298 + +1.9
1,919,802 + ECD_01859 0.27 -0.4
1,920,165 + ECD_01859 0.45 +0.2
1,920,166 - ECD_01859 0.45 -0.3
1,920,244 - ECD_01859 0.49 -1.3
1,920,859 + ECD_01859 0.80 -0.9
1,920,890 + ECD_01859 0.82 -1.0
1,920,982 - ECD_01859 0.87 +0.4
1,921,228 + +0.6
1,921,467 - ECD_01860 0.24 +0.7
1,921,550 - ECD_01860 0.33 +0.0
1,921,550 - ECD_01860 0.33 -0.4
1,921,550 - ECD_01860 0.33 -0.3
1,921,550 - ECD_01860 0.33 -2.2
1,921,661 - ECD_01860 0.45 +1.8
1,921,727 - ECD_01860 0.52 -1.7
1,921,906 - ECD_01860 0.71 +0.2

Or see this region's nucleotide sequence