Strain Fitness in Escherichia coli BL21 around ECD_01668

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01667 and ECD_01668 are separated by 55 nucleotidesECD_01668 and ECD_01669 overlap by 4 nucleotidesECD_01669 and ECD_01670 are separated by 56 nucleotides ECD_01667: ECD_01667 - putative electron transfer flavoprotein, FAD-binding subunit, at 1,724,817 to 1,725,755 _01667 ECD_01668: ECD_01668 - putative oxidoreductase, at 1,725,811 to 1,727,100 _01668 ECD_01669: ECD_01669 - putative 3Fe-4S ferredoxin-type protein, at 1,727,097 to 1,727,390 _01669 ECD_01670: ECD_01670 - short chain acyl-CoA synthetase, anaerobic, at 1,727,447 to 1,729,093 _01670 Position (kb) 1725 1726 1727 1728Strain fitness (log2 ratio) -1 0 1at 1725.287 kb on + strand, within ECD_01667at 1725.321 kb on + strand, within ECD_01667at 1725.322 kb on - strand, within ECD_01667at 1726.352 kb on - strand, within ECD_01668at 1726.491 kb on + strand, within ECD_01668at 1727.244 kb on + strand, within ECD_01669at 1727.598 kb on - strandat 1727.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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1,725,287 + ECD_01667 0.50 +0.4
1,725,321 + ECD_01667 0.54 -0.3
1,725,322 - ECD_01667 0.54 -0.8
1,726,352 - ECD_01668 0.42 -0.7
1,726,491 + ECD_01668 0.53 -0.3
1,727,244 + ECD_01669 0.50 -0.8
1,727,598 - -0.5
1,727,604 - +0.8

Or see this region's nucleotide sequence