Strain Fitness in Escherichia coli BL21 around ECD_01263

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01262 and ECD_01263 are separated by 234 nucleotidesECD_01263 and ECD_01264 are separated by 67 nucleotides ECD_01262: ECD_01262 - cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability, at 1,331,125 to 1,333,110 _01262 ECD_01263: ECD_01263 - ribonuclease II, at 1,333,345 to 1,335,279 _01263 ECD_01264: ECD_01264 - putative oxidoreductase, at 1,335,347 to 1,336,474 _01264 Position (kb) 1333 1334 1335 1336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1332.564 kb on - strand, within ECD_01262at 1332.640 kb on - strand, within ECD_01262at 1333.632 kb on - strand, within ECD_01263at 1333.632 kb on - strand, within ECD_01263at 1333.776 kb on - strand, within ECD_01263at 1334.032 kb on - strand, within ECD_01263at 1334.042 kb on + strand, within ECD_01263at 1334.043 kb on - strand, within ECD_01263at 1334.043 kb on - strand, within ECD_01263at 1334.832 kb on - strand, within ECD_01263at 1334.850 kb on - strand, within ECD_01263at 1334.914 kb on - strand, within ECD_01263at 1335.203 kb on - strandat 1335.421 kb on + strandat 1335.694 kb on + strand, within ECD_01264at 1335.992 kb on + strand, within ECD_01264at 1336.054 kb on + strand, within ECD_01264at 1336.083 kb on + strand, within ECD_01264at 1336.147 kb on + strand, within ECD_01264at 1336.168 kb on + strand, within ECD_01264at 1336.168 kb on + strand, within ECD_01264

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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1,332,564 - ECD_01262 0.72 +0.1
1,332,640 - ECD_01262 0.76 -0.2
1,333,632 - ECD_01263 0.15 -0.2
1,333,632 - ECD_01263 0.15 -3.1
1,333,776 - ECD_01263 0.22 -0.4
1,334,032 - ECD_01263 0.36 -1.5
1,334,042 + ECD_01263 0.36 -1.4
1,334,043 - ECD_01263 0.36 -0.9
1,334,043 - ECD_01263 0.36 -0.2
1,334,832 - ECD_01263 0.77 -0.2
1,334,850 - ECD_01263 0.78 -0.8
1,334,914 - ECD_01263 0.81 +0.2
1,335,203 - -1.1
1,335,421 + +0.2
1,335,694 + ECD_01264 0.31 -0.1
1,335,992 + ECD_01264 0.57 -0.0
1,336,054 + ECD_01264 0.63 +0.3
1,336,083 + ECD_01264 0.65 -0.0
1,336,147 + ECD_01264 0.71 +2.2
1,336,168 + ECD_01264 0.73 +1.2
1,336,168 + ECD_01264 0.73 +0.3

Or see this region's nucleotide sequence