Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01246 and ECD_01247 overlap by 4 nucleotides ECD_01247 and ECD_01248 are separated by 219 nucleotides ECD_01248 and ECD_01249 are separated by 35 nucleotides ECD_01249 and ECD_01250 are separated by 379 nucleotides
ECD_01246: ECD_01246 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,314,137 to 1,314,727
_01246
ECD_01247: ECD_01247 - putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase, at 1,314,724 to 1,315,482
_01247
ECD_01248: ECD_01248 - inner membrane protein, S49 peptidase family protein, at 1,315,702 to 1,316,751
_01248
ECD_01249: ECD_01249 - DUF2498 protein YciN, at 1,316,787 to 1,317,038
_01249
ECD_01250: ECD_01250 - DNA topoisomerase I, omega subunit, at 1,317,418 to 1,320,015
_01250
Position (kb)
1315
1316
1317 Strain fitness (log2 ratio)
-2
-1
0
1 at 1314.990 kb on - strand, within ECD_01247 at 1314.990 kb on - strand, within ECD_01247 at 1315.036 kb on - strand, within ECD_01247 at 1315.070 kb on - strand, within ECD_01247 at 1315.316 kb on - strand, within ECD_01247 at 1315.523 kb on - strand at 1315.528 kb on - strand at 1315.647 kb on - strand at 1315.803 kb on + strand at 1315.852 kb on + strand, within ECD_01248 at 1315.854 kb on + strand, within ECD_01248 at 1315.938 kb on + strand, within ECD_01248 at 1316.639 kb on + strand, within ECD_01248 at 1316.644 kb on + strand, within ECD_01248 at 1317.040 kb on - strand at 1317.043 kb on + strand at 1317.177 kb on + strand at 1317.178 kb on - strand at 1317.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 1,314,990 - ECD_01247 0.35 -0.1 1,314,990 - ECD_01247 0.35 -0.0 1,315,036 - ECD_01247 0.41 -0.3 1,315,070 - ECD_01247 0.46 -1.9 1,315,316 - ECD_01247 0.78 +0.3 1,315,523 - +0.0 1,315,528 - -0.6 1,315,647 - +1.1 1,315,803 + +0.1 1,315,852 + ECD_01248 0.14 -0.5 1,315,854 + ECD_01248 0.14 +0.2 1,315,938 + ECD_01248 0.22 -1.8 1,316,639 + ECD_01248 0.89 -0.7 1,316,644 + ECD_01248 0.90 -0.8 1,317,040 - -0.5 1,317,043 + +1.4 1,317,177 + +0.6 1,317,178 - -1.1 1,317,404 + +0.9
Or see this region's nucleotide sequence