Strain Fitness in Escherichia coli BL21 around ECD_01245

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01245 and ECD_01246 are separated by 39 nucleotidesECD_01246 and ECD_01247 overlap by 4 nucleotides ECD_01245: ECD_01245 - 23S rRNA pseudouridine(2605) synthase, at 1,313,222 to 1,314,097 _01245 ECD_01246: ECD_01246 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,314,137 to 1,314,727 _01246 ECD_01247: ECD_01247 - putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase, at 1,314,724 to 1,315,482 _01247 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -3 -2 -1 0 1at 1312.836 kb on - strandat 1313.055 kb on + strandat 1313.056 kb on - strandat 1313.059 kb on - strandat 1313.103 kb on - strandat 1313.153 kb on + strandat 1313.221 kb on + strandat 1313.222 kb on - strandat 1313.287 kb on + strandat 1313.389 kb on + strand, within ECD_01245at 1313.389 kb on + strand, within ECD_01245at 1313.639 kb on + strand, within ECD_01245at 1313.932 kb on + strand, within ECD_01245at 1313.932 kb on + strand, within ECD_01245at 1313.932 kb on + strand, within ECD_01245at 1313.933 kb on - strand, within ECD_01245at 1314.082 kb on + strandat 1314.207 kb on - strand, within ECD_01246at 1314.335 kb on - strand, within ECD_01246at 1314.337 kb on - strand, within ECD_01246at 1314.337 kb on - strand, within ECD_01246at 1314.446 kb on - strand, within ECD_01246at 1314.536 kb on - strand, within ECD_01246at 1314.990 kb on - strand, within ECD_01247at 1314.990 kb on - strand, within ECD_01247at 1315.036 kb on - strand, within ECD_01247at 1315.070 kb on - strand, within ECD_01247

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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1,312,836 - +0.1
1,313,055 + -0.5
1,313,056 - -0.5
1,313,059 - -0.1
1,313,103 - -0.1
1,313,153 + -0.3
1,313,221 + -1.3
1,313,222 - -3.2
1,313,287 + -1.4
1,313,389 + ECD_01245 0.19 -2.4
1,313,389 + ECD_01245 0.19 -0.3
1,313,639 + ECD_01245 0.48 -1.3
1,313,932 + ECD_01245 0.81 +0.0
1,313,932 + ECD_01245 0.81 -0.5
1,313,932 + ECD_01245 0.81 -1.7
1,313,933 - ECD_01245 0.81 -0.1
1,314,082 + +1.1
1,314,207 - ECD_01246 0.12 -0.6
1,314,335 - ECD_01246 0.34 +0.4
1,314,337 - ECD_01246 0.34 -3.2
1,314,337 - ECD_01246 0.34 -0.0
1,314,446 - ECD_01246 0.52 -0.4
1,314,536 - ECD_01246 0.68 +0.7
1,314,990 - ECD_01247 0.35 -0.1
1,314,990 - ECD_01247 0.35 -0.0
1,315,036 - ECD_01247 0.41 -0.3
1,315,070 - ECD_01247 0.46 -1.9

Or see this region's nucleotide sequence