Strain Fitness in Escherichia coli BL21 around ECD_01172

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01170 and ECD_01171 are separated by 177 nucleotidesECD_01171 and ECD_01172 are separated by 78 nucleotidesECD_01172 and ECD_01173 are separated by 319 nucleotides ECD_01170: ECD_01170 - UPF0410 family putative inner membrane protein, at 1,232,876 to 1,233,130 _01170 ECD_01171: ECD_01171 - uncharacterized protein, at 1,233,308 to 1,233,748 _01171 ECD_01172: ECD_01172 - periplasmic trehalase, at 1,233,827 to 1,235,524 _01172 ECD_01173: ECD_01173 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components, at 1,235,844 to 1,237,262 _01173 Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1at 1233.676 kb on + strand, within ECD_01171at 1235.055 kb on + strand, within ECD_01172at 1235.088 kb on + strand, within ECD_01172at 1235.470 kb on + strandat 1236.006 kb on - strand, within ECD_01173at 1236.013 kb on - strand, within ECD_01173at 1236.072 kb on - strand, within ECD_01173at 1236.084 kb on - strand, within ECD_01173at 1236.156 kb on - strand, within ECD_01173at 1236.298 kb on - strand, within ECD_01173at 1236.306 kb on - strand, within ECD_01173

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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1,233,676 + ECD_01171 0.83 +0.9
1,235,055 + ECD_01172 0.72 +0.3
1,235,088 + ECD_01172 0.74 -1.8
1,235,470 + -0.6
1,236,006 - ECD_01173 0.11 -0.5
1,236,013 - ECD_01173 0.12 +0.2
1,236,072 - ECD_01173 0.16 -1.1
1,236,084 - ECD_01173 0.17 -0.2
1,236,156 - ECD_01173 0.22 +0.5
1,236,298 - ECD_01173 0.32 +0.7
1,236,306 - ECD_01173 0.33 -0.2

Or see this region's nucleotide sequence