Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01170 and ECD_01171 are separated by 177 nucleotides ECD_01171 and ECD_01172 are separated by 78 nucleotides ECD_01172 and ECD_01173 are separated by 319 nucleotides
ECD_01170: ECD_01170 - UPF0410 family putative inner membrane protein, at 1,232,876 to 1,233,130
_01170
ECD_01171: ECD_01171 - uncharacterized protein, at 1,233,308 to 1,233,748
_01171
ECD_01172: ECD_01172 - periplasmic trehalase, at 1,233,827 to 1,235,524
_01172
ECD_01173: ECD_01173 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components, at 1,235,844 to 1,237,262
_01173
Position (kb) 1233
1234
1235
1236 Strain fitness (log2 ratio) -2
-1
0
1 at 1233.676 kb on + strand, within ECD_01171 at 1235.055 kb on + strand, within ECD_01172 at 1235.088 kb on + strand, within ECD_01172 at 1235.470 kb on + strand at 1236.006 kb on - strand, within ECD_01173 at 1236.013 kb on - strand, within ECD_01173 at 1236.072 kb on - strand, within ECD_01173 at 1236.084 kb on - strand, within ECD_01173 at 1236.156 kb on - strand, within ECD_01173 at 1236.298 kb on - strand, within ECD_01173 at 1236.306 kb on - strand, within ECD_01173
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 1,233,676 + ECD_01171 0.83 +0.9 1,235,055 + ECD_01172 0.72 +0.3 1,235,088 + ECD_01172 0.74 -1.8 1,235,470 + -0.6 1,236,006 - ECD_01173 0.11 -0.5 1,236,013 - ECD_01173 0.12 +0.2 1,236,072 - ECD_01173 0.16 -1.1 1,236,084 - ECD_01173 0.17 -0.2 1,236,156 - ECD_01173 0.22 +0.5 1,236,298 - ECD_01173 0.32 +0.7 1,236,306 - ECD_01173 0.33 -0.2
Or see this region's nucleotide sequence