Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01079 and ECD_01080 are separated by 195 nucleotides ECD_01080 and ECD_01081 are separated by 134 nucleotides ECD_01081 and ECD_01082 are separated by 117 nucleotides
ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553
_01079
ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934
_01080
ECD_01081: ECD_01081 - uncharacterized protein, at 1,147,069 to 1,147,389
_01081
ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466
_01082
Position (kb)
1143
1144
1145
1146
1147 Strain fitness (log2 ratio)
-2
-1
0
1 at 1142.783 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.839 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.114 kb on + strand, within ECD_01079 at 1143.145 kb on + strand, within ECD_01079 at 1143.289 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.387 kb on + strand, within ECD_01079 at 1143.500 kb on + strand at 1143.500 kb on + strand at 1143.502 kb on + strand at 1143.634 kb on + strand at 1143.748 kb on - strand at 1143.823 kb on + strand at 1144.035 kb on - strand at 1144.170 kb on - strand, within ECD_01080 at 1144.341 kb on - strand, within ECD_01080 at 1144.341 kb on - strand, within ECD_01080 at 1144.374 kb on - strand, within ECD_01080 at 1145.011 kb on + strand, within ECD_01080 at 1145.269 kb on + strand, within ECD_01080 at 1145.436 kb on + strand, within ECD_01080 at 1145.436 kb on + strand, within ECD_01080 at 1145.437 kb on - strand, within ECD_01080 at 1145.437 kb on - strand, within ECD_01080 at 1145.437 kb on - strand, within ECD_01080 at 1147.133 kb on - strand, within ECD_01081 at 1147.205 kb on - strand, within ECD_01081 at 1147.327 kb on - strand, within ECD_01081 at 1147.327 kb on - strand, within ECD_01081 at 1147.431 kb on - strand at 1147.452 kb on + strand at 1147.569 kb on + strand at 1147.665 kb on + strand, within ECD_01082 at 1147.668 kb on + strand, within ECD_01082 at 1147.707 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.795 kb on + strand, within ECD_01082 at 1147.844 kb on + strand, within ECD_01082 at 1147.862 kb on + strand, within ECD_01082
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 1,142,783 + ECD_01079 0.19 +0.4 1,142,835 + ECD_01079 0.25 -1.1 1,142,835 + ECD_01079 0.25 +0.1 1,142,839 + ECD_01079 0.25 +0.2 1,143,056 + ECD_01079 0.48 +0.6 1,143,056 + ECD_01079 0.48 +0.2 1,143,114 + ECD_01079 0.54 -1.8 1,143,145 + ECD_01079 0.57 +0.4 1,143,289 + ECD_01079 0.72 +0.9 1,143,348 + ECD_01079 0.78 +0.1 1,143,348 + ECD_01079 0.78 +0.7 1,143,387 + ECD_01079 0.82 +1.0 1,143,500 + +0.0 1,143,500 + -0.4 1,143,502 + +0.1 1,143,634 + -0.6 1,143,748 - +0.0 1,143,823 + +0.5 1,144,035 - -0.5 1,144,170 - ECD_01080 0.13 -0.5 1,144,341 - ECD_01080 0.19 -0.8 1,144,341 - ECD_01080 0.19 -0.4 1,144,374 - ECD_01080 0.20 -1.8 1,145,011 + ECD_01080 0.40 +0.3 1,145,269 + ECD_01080 0.48 -1.4 1,145,436 + ECD_01080 0.53 -1.1 1,145,436 + ECD_01080 0.53 -0.9 1,145,437 - ECD_01080 0.53 -1.1 1,145,437 - ECD_01080 0.53 -0.2 1,145,437 - ECD_01080 0.53 -0.6 1,147,133 - ECD_01081 0.20 -0.3 1,147,205 - ECD_01081 0.42 +0.2 1,147,327 - ECD_01081 0.80 +0.1 1,147,327 - ECD_01081 0.80 +0.4 1,147,431 - -0.8 1,147,452 + -0.5 1,147,569 + +0.1 1,147,665 + ECD_01082 0.16 -0.6 1,147,668 + ECD_01082 0.17 +0.1 1,147,707 + ECD_01082 0.21 -0.1 1,147,793 + ECD_01082 0.30 +0.7 1,147,793 + ECD_01082 0.30 -0.8 1,147,793 + ECD_01082 0.30 -0.4 1,147,795 + ECD_01082 0.30 -1.2 1,147,844 + ECD_01082 0.35 -0.9 1,147,862 + ECD_01082 0.37 +0.5
Or see this region's nucleotide sequence