Experiment: Bas33
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00932 and ECD_00933 are separated by 184 nucleotides ECD_00933 and ECD_00934 are separated by 601 nucleotides
ECD_00932: ECD_00932 - aspartate aminotransferase, PLP-dependent, at 989,609 to 990,799
_00932
ECD_00933: ECD_00933 - outer membrane porin 1a (Ia, at 990,984 to 992,072
_00933
ECD_00934: ECD_00934 - asparaginyl tRNA synthetase, at 992,674 to 994,074
_00934
Position (kb) 990
991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 991.070 kb on - strand at 991.079 kb on - strand at 991.079 kb on - strand at 991.184 kb on - strand, within ECD_00933 at 991.331 kb on - strand, within ECD_00933 at 991.436 kb on - strand, within ECD_00933 at 991.476 kb on - strand, within ECD_00933 at 991.587 kb on - strand, within ECD_00933 at 991.592 kb on - strand, within ECD_00933 at 991.592 kb on - strand, within ECD_00933 at 991.596 kb on - strand, within ECD_00933 at 991.596 kb on - strand, within ECD_00933 at 991.637 kb on - strand, within ECD_00933 at 991.691 kb on - strand, within ECD_00933 at 991.703 kb on - strand, within ECD_00933 at 991.703 kb on - strand, within ECD_00933 at 991.739 kb on - strand, within ECD_00933 at 991.743 kb on - strand, within ECD_00933 at 991.743 kb on - strand, within ECD_00933 at 992.078 kb on - strand at 992.078 kb on - strand at 992.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas33 remove 991,070 - +2.9 991,079 - -1.9 991,079 - -1.2 991,184 - ECD_00933 0.18 -1.1 991,331 - ECD_00933 0.32 -0.6 991,436 - ECD_00933 0.42 -0.6 991,476 - ECD_00933 0.45 +0.1 991,587 - ECD_00933 0.55 -1.8 991,592 - ECD_00933 0.56 -0.4 991,592 - ECD_00933 0.56 -0.6 991,596 - ECD_00933 0.56 -0.2 991,596 - ECD_00933 0.56 +0.9 991,637 - ECD_00933 0.60 -1.4 991,691 - ECD_00933 0.65 +1.4 991,703 - ECD_00933 0.66 -0.6 991,703 - ECD_00933 0.66 -1.1 991,739 - ECD_00933 0.69 -0.6 991,743 - ECD_00933 0.70 -3.1 991,743 - ECD_00933 0.70 -0.1 992,078 - -1.6 992,078 - -1.2 992,481 - -0.7
Or see this region's nucleotide sequence