Strain Fitness in Escherichia coli BL21 around ECD_00889

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_t00022 and ECD_00888 are separated by 252 nucleotidesECD_00888 and ECD_00889 are separated by 284 nucleotidesECD_00889 and ECD_00890 are separated by 41 nucleotides ECD_t00022: ECD_t00022 - tRNA-Ser, at 930,941 to 931,028 _t00022 ECD_00888: ECD_00888 - translation initiation factor IF-1, at 931,281 to 931,499 _00888 ECD_00889: ECD_00889 - leucyl/phenylalanyl-tRNA-protein transferase, at 931,784 to 932,488 _00889 ECD_00890: ECD_00890 - glutathione/cysteine ABC transporter export permease/ATPase, at 932,530 to 934,251 _00890 Position (kb) 931 932 933Strain fitness (log2 ratio) -2 -1 0 1at 930.896 kb on - strandat 931.156 kb on - strandat 931.156 kb on - strandat 931.160 kb on - strandat 931.274 kb on - strandat 931.611 kb on - strandat 931.611 kb on - strandat 931.652 kb on + strandat 931.653 kb on - strandat 931.653 kb on - strandat 932.033 kb on + strand, within ECD_00889at 932.055 kb on + strand, within ECD_00889at 932.056 kb on - strand, within ECD_00889at 932.430 kb on - strandat 932.430 kb on - strandat 932.524 kb on - strandat 932.526 kb on + strandat 932.527 kb on - strandat 932.532 kb on - strandat 932.627 kb on - strandat 932.627 kb on - strandat 932.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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930,896 - -0.1
931,156 - -2.5
931,156 - -0.3
931,160 - +0.1
931,274 - -0.2
931,611 - +0.4
931,611 - +0.5
931,652 + -1.0
931,653 - -0.5
931,653 - +0.8
932,033 + ECD_00889 0.35 +0.4
932,055 + ECD_00889 0.38 -1.0
932,056 - ECD_00889 0.39 -0.7
932,430 - +0.3
932,430 - -0.4
932,524 - +0.8
932,526 + -0.1
932,527 - -0.2
932,532 - -0.5
932,627 - -0.0
932,627 - -0.4
932,627 - -0.9

Or see this region's nucleotide sequence