Strain Fitness in Escherichia coli BL21 around ECD_00861

Experiment: Bas33

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00860 and ECD_00861 are separated by 9 nucleotidesECD_00861 and ECD_00862 overlap by 4 nucleotidesECD_00862 and ECD_00863 are separated by 59 nucleotides ECD_00860: ECD_00860 - putrescine ABC transporter ATPase, at 899,695 to 900,828 _00860 ECD_00861: ECD_00861 - putrescine ABC transporter permease, at 900,838 to 901,791 _00861 ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633 _00862 ECD_00863: ECD_00863 - DUF2593 family inner membrane protein, at 902,693 to 903,181 _00863 Position (kb) 900 901 902Strain fitness (log2 ratio) -2 -1 0 1at 899.884 kb on - strand, within ECD_00860at 899.992 kb on + strand, within ECD_00860at 900.057 kb on - strand, within ECD_00860at 900.203 kb on + strand, within ECD_00860at 900.204 kb on - strand, within ECD_00860at 900.407 kb on - strand, within ECD_00860at 900.420 kb on + strand, within ECD_00860at 900.633 kb on + strand, within ECD_00860at 900.656 kb on + strand, within ECD_00860at 900.732 kb on - strandat 901.036 kb on - strand, within ECD_00861at 901.132 kb on + strand, within ECD_00861at 901.133 kb on - strand, within ECD_00861at 901.178 kb on + strand, within ECD_00861at 901.218 kb on + strand, within ECD_00861at 901.219 kb on - strand, within ECD_00861at 901.401 kb on + strand, within ECD_00861at 901.420 kb on + strand, within ECD_00861at 901.560 kb on + strand, within ECD_00861at 902.039 kb on + strand, within ECD_00862at 902.039 kb on + strand, within ECD_00862at 902.210 kb on + strand, within ECD_00862at 902.247 kb on + strand, within ECD_00862at 902.402 kb on + strand, within ECD_00862at 902.663 kb on + strandat 902.789 kb on - strand, within ECD_00863at 902.791 kb on + strand, within ECD_00863

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas33
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899,884 - ECD_00860 0.17 +1.0
899,992 + ECD_00860 0.26 +1.5
900,057 - ECD_00860 0.32 +0.6
900,203 + ECD_00860 0.45 +0.2
900,204 - ECD_00860 0.45 +0.4
900,407 - ECD_00860 0.63 +0.7
900,420 + ECD_00860 0.64 -0.0
900,633 + ECD_00860 0.83 -0.1
900,656 + ECD_00860 0.85 +0.6
900,732 - +0.6
901,036 - ECD_00861 0.21 -0.6
901,132 + ECD_00861 0.31 -0.6
901,133 - ECD_00861 0.31 +1.1
901,178 + ECD_00861 0.36 -0.4
901,218 + ECD_00861 0.40 +0.2
901,219 - ECD_00861 0.40 -1.0
901,401 + ECD_00861 0.59 -1.4
901,420 + ECD_00861 0.61 -0.9
901,560 + ECD_00861 0.76 -0.5
902,039 + ECD_00862 0.30 -1.8
902,039 + ECD_00862 0.30 -0.4
902,210 + ECD_00862 0.50 +0.6
902,247 + ECD_00862 0.54 -0.4
902,402 + ECD_00862 0.73 -1.6
902,663 + -0.5
902,789 - ECD_00863 0.20 -1.1
902,791 + ECD_00863 0.20 +0.6

Or see this region's nucleotide sequence